Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study-Reference-Cited by-同舟云学术

Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study

Published:2011-08 Issue:2 Volume:86 Page:218-223
ISSN:0167-7012
Container-title:Journal of Microbiological Methods
language:en
Short-container-title:Journal of Microbiological Methods

Author:

Cerdeira Louise Teixeira,Carneiro Adriana Ribeiro,Ramos Rommel Thiago Jucá,de Almeida Sintia Silva,D´Afonseca Vivian,Schneider Maria Paula Cruz,Baumbach Jan,Tauch Andreas,McCulloch John Anthony,Azevedo Vasco Ariston Carvalho,Silva Artur

Funder

Rede Paraense de Genômica e Proteômica (Genomics and Proteomics Network of the State of Pará)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Publisher

Elsevier BV

Subject

Microbiology (medical),Molecular Biology,Microbiology

Reference19 articles.

1. ALLPATHS: de novo assembly of whole-genome shotgun microreads;Butler;Genome Res.,2008

2. De novo fragment assembly with short mate-paired reads: does the read length matter?;Chaisson;Genome Research,2009

3. Base-calling of automated sequencer traces using Phred. II. Error probabilities;Ewing;Genome Res.,1998

4. De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer;Hernandez;Genome Research,2008

5. Crystallizing short-read assemblies around seeds;Hossain;BMC Bioinforma.,2009

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