In silico screening of ssDNA aptamer against Escherichia coli O157:H7: A machine learning and the Pseudo K-tuple nucleotide composition based approach-Reference-Cited by-同舟云学术

In silico screening of ssDNA aptamer against Escherichia coli O157:H7: A machine learning and the Pseudo K-tuple nucleotide composition based approach

Published:2021-12 Issue: Volume:95 Page:107568
ISSN:1476-9271
Container-title:Computational Biology and Chemistry
language:en
Short-container-title:Computational Biology and Chemistry

Author:

Nosrati Mokhtar,amani Jafar

Funder

Baqiyatallah University of Medical Sciences

Publisher

Elsevier BV

Subject

Computational Mathematics,Organic Chemistry,Biochemistry,Structural Biology

Reference59 articles.

1. A review on Escherichia coli O157: H7-the super pathogen;Adamu;Health,2014

2. iRNA-PseTNC: identification of RNA 5-methylcytosine sites using hybrid vector space of pseudo nucleotide composition;Akbar;Front. Comput. Sci.,2020

3. FASTAptamer: a bioinformatic toolkit for high-throughput sequence analysis of combinatorial selections;Alam;Mol. Ther. Nucleic Acids,2015

4. DNA aptamer identification and characterization for E. coli O157 detection using cell based SELEX method;Amraee;Anal. Biochem.,2017

5. Development of ssDNA aptamers as potent inhibitors of Mycobacterium tuberculosis acetohydroxyacid synthase;Baig;Biochim. Biophys. Acta (BBA)-Proteins Proteom.,2015

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