DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research

Author:

López-Fernández Hugo,Blanco-Míguez Aitor,Fdez-Riverola Florentino,Sánchez Borja,Lourenço Anália

Funder

Spanish “Programa Estatal de Investigación, Desarrollo e Inovación Orientada a los Retos de la Sociedad”

Asociación Española Contra el Cancer (“Obtención de péptidos bioactivos contra el Cáncer Colo-Rectal a partir de secuencias genéticas de microbiomas intestinales”

Consellería de Educación, Universidades e Formación Profesional (Xunta de Galicia)

Portuguese Foundation for Science and Technology

Asturias Regional Plan I + D + i for research groups

post-doctoral fellowship from Xunta de Galicia

Publisher

Elsevier BV

Subject

Health Informatics,Computer Science Applications

Reference44 articles.

1. Transcriptional and post-transcriptional gene regulation by long non-coding RNA, genomics;Dykes;Proteomics, Bioinf.,2017

2. Resolving host–pathogen interactions by dual RNA-seq;Westermann;PLoS Pathog.,2017

3. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation;Trapnell;Nat. Biotechnol.,2010

4. A survey of best practices for RNA-seq data analysis;Conesa;Genome Biol.,2016

5. S. Andrews, FastQC: a quality control tool for high throughput sequence data, (n.d.). https://www.bioinformatics.babraham.ac.uk/projects/fastqc/(Accessed 28 November, 2017).

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