Multiplexed next-generation sequencing and de novo assembly to obtain near full-length HIV-1 genome from plasma virus

Author:

Aralaguppe Shambhu G.,Siddik Abu Bakar,Manickam Ashokkumar,Ambikan Anoop T.,Kumar Milner M.,Fernandes Sunjay Jude,Amogne Wondwossen,Bangaruswamy Dhinoth K.,Hanna Luke Elizabeth,Sonnerborg Anders,Neogi Ujjwal

Funder

National Institute of Allergy and Infectious Diseases, National Institutes of Health

Swedish Institute

Karolinska Institutet Research Foundation Grant

Swedish Research Council

Stockholm County Council

Publisher

Elsevier BV

Subject

Virology

Reference38 articles.

1. High failure rate of the ViroSeq HIV-1 genotyping system for drug resistance testing in Cameroon, a country with broad HIV-1 genetic diversity;Aghokeng;J. Clin. Microbiol.,2011

2. Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism;Archer;PLoS One,2012

3. A pan-HIV strategy for complete genome sequencing;Berg;J. Clin. Microbiol.,2016

4. Development of the clinical next-generation sequencing industry in a shifting policy climate;Curnutte;Nat. Biotechnol.,2014

5. Near full-length HIV-1 sequencing to understand HIV phylodynamics in Africa in real time;Danaviah;Conference on Retroviruses and Opportunistic Infections (CROI),2015

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