Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak-Reference-Cited by-同舟云学术

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Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak

Published:2018-06 Issue: Volume:274 Page:1-11
ISSN:0168-1605
Container-title:International Journal of Food Microbiology
language:en
Short-container-title:International Journal of Food Microbiology

Author:

Pearce Madison E.,Alikhan Nabil-Fareed,Dallman Timothy J.,Zhou Zhemin,Grant Kathie,Maiden Martin C.J.

Funder

National Institute for Health Research

Wellcome Trust

Publisher

Elsevier BV

Subject

General Medicine,Microbiology,Food Science

Reference59 articles.

1. Multilocus sequence typing as a replacement for serotyping in Salmonella enterica;Achtman;PLoS Pathog.,2012

2. Revolutionising public health reference microbiology using whole genome sequencing: Salmonella as an exemplar;Ashton;bioRxiv,2015

3. Identification of Salmonella for public health surveillance using whole genome sequencing;Ashton;PeerJ,2016

4. A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type;Bakker;Appl. Environ. Microbiol.,2011

5. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing;Bankevich;J. Comput. Biol.,2012

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