A new distributed alignment-free approach to compare whole proteomes-Reference-Cited by-同舟云学术

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A new distributed alignment-free approach to compare whole proteomes

Published:2017-10 Issue: Volume:698 Page:100-112
ISSN:0304-3975
Container-title:Theoretical Computer Science
language:en
Short-container-title:Theoretical Computer Science

Author:

Ferraro Petrillo Umberto,Guerra Concettina,Pizzi Cinzia^ORCID

Funder

InDAM-GNCS

United States–Israel Binational Science Foundation

Ministry of Education, University and Research

Publisher

Elsevier BV

Subject

General Computer Science,Theoretical Computer Science

Reference35 articles.

1. Phylogenetic structure of the prokaryotic domain: the primary kingdoms;Woese;Proc. Natl. Acad. Sci. USA,1977

2. Genome trees and the tree of life;Wolf;Trends Genet.,2002

3. The average common substring approach to phylogenomic reconstruction;Ulitsky;J. Comput. Biol.,2006

4. Whole-proteome phylogeny of prokaryotes by feature frequency profiles: an alignment-free method with optimal feature resolution;Jun;Proc. Natl. Acad. Sci. USA,2010

5. Construction of a phylogenetic tree of photosynthetic prokaryotes based on average similarities of whole genome sequences;Satoh;PLoS One,2013

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3. Informational and linguistic analysis of large genomic sequence collections via efficient Hadoop cluster algorithms;Bioinformatics;2018-01-12

4. The Colored Longest Common Prefix Array Computed via Sequential Scans;String Processing and Information Retrieval;2018

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