Approximating the maximum multiple RNA interaction problem

Author:

Tong Weitian,Goebel Randy,Liu Tian,Lin Guohui

Funder

NSERC

AITF

iCORE

Zhejiang Normal University

Publisher

Elsevier BV

Subject

General Computer Science,Theoretical Computer Science

Reference18 articles.

1. A combinatorial approach for multiple RNA interaction: formulations, approximations, and heuristics;Ahmed,2013

2. RNA–RNA interaction prediction and antisense RNA target search;Alkan;J. Comput. Biol.,2006

3. An improved approximation algorithm for the bandpass-2 problem;Chen,2012

4. biRNA: fast RNA–RNA binding sites prediction;Chitsaz,2009

5. A partition function algorithm for interacting nucleic acid strands;Chitsaz;Bioinformatics,2009

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1. C-RCPred: a multi-objective algorithm for interactive secondary structure prediction of RNA complexes integrating user knowledge and SHAPE data;Briefings in Bioinformatics;2023-06-19

2. The band collocation problem;Journal of Combinatorial Optimization;2020-06-01

3. Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-Optimal Solutions;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2019-05-01

4. RCPred: RNA complex prediction as a constrained maximum weight clique problem;BMC Bioinformatics;2019-03

5. Making Multiple RNA Interaction Practical;Combinatorial Optimization and Applications;2018

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