Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a-Reference-Cited by-同舟云学术

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Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a

Published:2021-01 Issue: Volume:292 Page:198233
ISSN:0168-1702
Container-title:Virus Research
language:en
Short-container-title:Virus Research

Author:

Joonlasak Khajohn,Batty Elizabeth M,Kochakarn Theerarat,Panthan Bhakbhoom,Kümpornsin Krittikorn,Jiaranai Poramate,Wangwiwatsin Arporn,Huang Angkana,Kotanan Namfon,Jaru-Ampornpan Peera,Manasatienkij Wudtichai,Watthanachockchai Treewat,Rakmanee Kingkan,Jones Anthony R.,Fernandez Stefan,Sensorn Insee,Sungkanuparph Somnuek,Pasomsub Ekawat,Klungthong Chonticha,Chookajorn Thanat,Chantratita Wasun

Funder

Wellcome Trust

National Research Council of Thailand

Mahidol University

Armed Forces Health Surveillance Branch

Thailand Center of Excellence for Life Sciences

National Institute for Health Research

Ramathibodi Foundation

Publisher

Elsevier BV

Subject

Cancer Research,Infectious Diseases,Virology

Reference20 articles.

1. Bayesian phylogenetics with BEAUti and the BEAST 1.7;Drummond;Mol. Biol. Evol.,2012

2. Characterization of a unique group-specific protein (U122) of the severe acute respiratory syndrome coronavirus;Fielding;J. Virol.,2004

3. Towards a genomics-informed, real-time, global pathogen surveillance system;Gardy;Nat. Rev. Genet.,2018

4. Genomic and epidemiological surveillance of zika virus in the Amazon region;Giovanetti;Cell Rep.,2020

5. An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar;Grubaugh;Genome Biol.,2019

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1. Near complete genome sequences from Southern Vietnam revealed local features of genetic diversity and intergenerational changes in SARS- CoV-2 variants in 2020–2021;BMC Infectious Diseases;2023-11-17

2. Genetic diversity of SARS-CoV-2 in Southern Vietnam in 2020-2021;2023-06-26

3. Evaluation of SARS-CoV-2 ORF7a Deletions from COVID-19-Positive Individuals and Its Impact on Virus Spread in Cell Culture;Viruses;2023-03-21

4. Persistence of a Frameshifting Deletion in SARS-CoV-2 ORF7a for the Duration of a Major Outbreak;Viruses;2023-02-13

5. Emergence and spreading of the largest SARS-CoV-2 deletion in the Delta AY.20 lineage from Uruguay;Gene Reports;2022-12

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