Enhancing personalized gene expression prediction from DNA sequences using genomic foundation models-Reference-Cited by-同舟云学术

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Enhancing personalized gene expression prediction from DNA sequences using genomic foundation models

Published:2024-10 Issue:4 Volume:5 Page:100347
ISSN:2666-2477
Container-title:Human Genetics and Genomics Advances
language:en
Short-container-title:Human Genetics and Genomics Advances

Author:

Ramprasad Pratik,Pai Nidhi^ORCID,Pan Wei^ORCID

Funder

NIH

Publisher

Elsevier BV

Reference24 articles.

1. Effective gene expression prediction from sequence by integrating long-range interactions;Avsec;Nat. Methods,2021

2. Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk;Zhou;Nat. Genet.,2018

3. The nucleotide transformer: Building and evaluating robust foundation models for human genomics;Dalla-Torre;bioRxiv,2023

4. Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks;Kelley;Genome Res.,2016

5. Predicting mrna abundance directly from genomic sequence using deep convolutional neural networks;Agarwal;Cell Rep.,2020

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