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Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites

  • Published:2023-06 Issue:6 Volume:3 Page:100317
  • ISSN:2666-979X
  • Container-title:Cell Genomics
  • language:en
  • Short-container-title:Cell Genomics

Author:

Boyle Evan A.,Her Hsuan-Lin,Mueller Jasmine R.,Naritomi Jack T.,Nguyen Grady G.,Yeo Gene W.ORCID

Funder

NIH

Helen Hay Whitney Foundation

University of California, San Diego

The Paul G Allen Frontiers Group

National University of Singapore

Publisher

Elsevier BV

Subject

Genetics,Biochemistry, Genetics and Molecular Biology (miscellaneous)

Reference90 articles.

1. A brave new world of RNA-binding proteins;Hentze;Nat. Rev. Mol. Cell Biol.,2018

2. A census of human RNA-binding proteins;Gerstberger;Nat. Rev. Genet.,2014

3. CLIP and complementary methods;Hafner;Nature Reviews Methods Primers,2021

4. Advances and challenges in the detection of transcriptome-wide protein--RNA interactions;Wheeler;Wiley Interdiscip. Rev. RNA,2018

5. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP);Van Nostrand;Nat. Methods,2016

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