iScore: An MPI supported software for ranking protein–protein docking models based on a random walk graph kernel and support vector machines-Reference-Cited by-同舟云学术

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iScore: An MPI supported software for ranking protein–protein docking models based on a random walk graph kernel and support vector machines

Published:2020-01 Issue: Volume:11 Page:100462
ISSN:2352-7110
Container-title:SoftwareX
language:en
Short-container-title:SoftwareX

Author:

Renaud Nicolas,Jung Yong,Honavar Vasant,Geng Cunliang,Bonvin Alexandre M.J.J.,Xue Li C.

Funder

Netherlands eScience Center

China Scholarship Council

Netherlands Organisation for Scientific Research

National Science FoundationUSA

National Institutes of Health

Institute for Cyberscience, USA

Huck Institutes of the Life Sciences

Pennsylvania State University, USA

Indian Institute of Science

Publisher

Elsevier BV

Subject

Computer Science Applications,Software

Reference33 articles.

1. Structural systems biology: modelling protein interactions;Aloy;Nat Rev Mol Cell Biol,2006

2. Analyzing protein interaction networks using structural information;Kiel;Annu Rev Biochem,2008

3. Principles of docking: An overview of search algorithms and a guide to scoring functions;Halperin;Proteins: Struct Funct Bioinform,2002

4. Prediction of biomolecular complexes;Vangone,2017

5. HexServer: an FFT-based protein docking server powered by graphics processors;Macindoe;Nucleic Acids Res,2010

Cited by 5 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Open-Source Machine Learning in Computational Chemistry;Journal of Chemical Information and Modeling;2023-07-19

2. DeepRank: a deep learning framework for data mining 3D protein-protein interfaces;Nature Communications;2021-12

3. Protein–Protein Docking: Past, Present, and Future;The Protein Journal;2021-11-17

4. Native or Non-Native Protein–Protein Docking Models? Molecular Dynamics to the Rescue;Journal of Chemical Theory and Computation;2021-08-03

5. DeepRank: A deep learning framework for data mining 3D protein-protein interfaces;2021-02-01

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