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GTO: A toolkit to unify pipelines in genomic and proteomic research

  • Published:2020-07 Issue: Volume:12 Page:100535
  • ISSN:2352-7110
  • Container-title:SoftwareX
  • language:en
  • Short-container-title:SoftwareX

Author:

Almeida João R.,Pinho Armando J.,Oliveira José L.,Fajarda Olga,Pratas Diogo

Funder

Fundação para a Ciência e a Tecnologia

Publisher

Elsevier BV

Subject

Computer Science Applications,Software

Reference38 articles.

1. DNA sequencing technologies: 2006–2016;Mardis;Nat Protoc,2017

2. From FASTQ data to high-confidence variant calls: the genome analysis toolkit best practices pipeline;Van der Auwera;Curr Protoc Bioinform,2013

3. ProteoWizard: open source software for rapid proteomics tools development;Kessner;Bioinformatics,2008

4. Fastp: an ultra-fast all-in-one FASTQ preprocessor;Chen;Bioinformatics,2018

5. Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers;Liu;Bioinformatics,2019

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