Computational outlook on the ribosome as an entropy trap
Author:
Publisher
Elsevier BV
Subject
Physical and Theoretical Chemistry,Condensed Matter Physics,Biochemistry
Reference19 articles.
1. Mechanism of peptide bond synthesis on the ribosome;Trobro;Proc. Natl. Acad. Sci. USA,2005
2. The ribosome as an entropy trap;Sievers;Proc. Natl. Acad. Sci. USA,2004
3. Peptide bond formation does not involve acid–base catalysis by ribosomal residues;Bieling;Nat. Struct. Mol. Biol.,2006
4. The transition state for peptide bond formation reveals the ribosome as a water trap;Wallin;Proc. Natl. Acad. Sci. USA,2009
5. Trapped water molecules are essential to structural dynamics and function of a ribozyme;Rhodes;Proc. Natl. Acad. Sci. USA,2006
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1. The energy landscape of the ribosome;Biopolymers;2023-12-05
2. Theoretical Study of the Mechanism of Ribosomal Peptide Bond Formation Using the ONIOM Method;Chemical and Pharmaceutical Bulletin;2021-08-01
3. Peptide Release on the Ribosome Involves Substrate-Assisted Base Catalysis;ACS Catalysis;2016-11-22
4. NMR contour maps as a new parameter of carboxyl’s OH groups in amino acids recognition: A reason of tRNA–amino acid conjugation;Chemical Physics;2014-03
5. Bridging the gap between ribosome structure and biochemistry by mechanistic computations;Current Opinion in Structural Biology;2012-12
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