Quality control and integration of genotypes from two calling pipelines for whole genome sequence data in the Alzheimer's disease sequencing project-Reference-Cited by-同舟云学术

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Quality control and integration of genotypes from two calling pipelines for whole genome sequence data in the Alzheimer's disease sequencing project

Published:2019-07 Issue:4 Volume:111 Page:808-818
ISSN:0888-7543
Container-title:Genomics
language:en
Short-container-title:Genomics

Author:

Naj Adam C.^ORCID,Lin Honghuang,Vardarajan Badri N.,White Simon,Lancour Daniel^ORCID,Ma Yiyi,Schmidt Michael,Sun Fangui,Butkiewicz Mariusz,Bush William S.,Kunkle Brian W.,Malamon John,Amin Najaf,Choi Seung Hoan,Hamilton-Nelson Kara L.,van der Lee Sven J.,Gupta Namrata,Koboldt Daniel C.,Saad Mohamad^ORCID,Wang Bowen,Nato Alejandro Q.,Sohi Harkirat K.,Kuzma Amanda^ORCID,Wang Li-San,Cupples L. Adrienne,van Duijn Cornelia,Seshadri Sudha,Schellenberg Gerard D.,Boerwinkle Eric,Bis Joshua C.,Dupuis Josée,Salerno William J.,Wijsman Ellen M.,Martin Eden R.,DeStefano Anita L.

Funder

Large Scale Sequencing and Analysis Centers

NIA

National Heart, Lung, and Blood Institute

National Institute of Health

CHARGE

NHLBI

Austrian Stroke Prevention Study

Cardiovascular Health Study

Erasmus Rucphen Family Study

Framingham Heart Study

Rotterdam Study

Baylor College of Medicine

Broad Institute Genome Center

Washington University Genome Institute

National Cell Repository for Alzheimer’s Disease

National Alzheimer’s Coordinating Center

National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site

Publisher

Elsevier BV

Subject

Genetics

Reference29 articles.

1. Sequencing technologies and genome sequencing;Pareek;J. Appl. Genet.,2011

2. QC-Chain: fast and holistic quality control method for next-generation sequencing data;Zhou;PLoS ONE,2013

3. Three-stage quality control strategies for DNA re-sequencing data;Guo;Brief. Bioinform.,2014

4. NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

5. Quality control and preprocessing of metagenomic datasets;Schmieder;Bioinformatics,2011

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