Hybrid assembly of ultra-long Nanopore reads augmented with 10x-Genomics contigs: Demonstrated with a human genome-Reference-Cited by-同舟云学术

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Hybrid assembly of ultra-long Nanopore reads augmented with 10x-Genomics contigs: Demonstrated with a human genome

Published:2019-12 Issue:6 Volume:111 Page:1896-1901
ISSN:0888-7543
Container-title:Genomics
language:en
Short-container-title:Genomics

Author:

Ma Zhanshan (Sam),Li Lianwei,Ye Chengxi,Peng Minsheng,Zhang Ya-Ping

Funder

National Science Foundation of China

Cloud-Ridge Industry Technology Leader Grant

A China-US International Cooperation Project on Genomics/Metagenomics Big Data

Publisher

Elsevier BV

Subject

Genetics

Reference39 articles.

1. HybridSPAdes: an algorithm for hybrid assembly of short and long reads;Antipov;Bioinformatics,2016

2. A hybrid approach for the automated finishing of bacterial genomes;Bashir;Nat. Biotechnol.,2012

3. Assembling large genomes with single-molecule sequencing and locality-sensitive hashing;Berlin;Nat. Biotechnol.,2015

4. Resolving the complexity of the human genome using singlemolecule sequencing;Chaisson;Nature,2015

5. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data;Chin;Nat. Methods,2013

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