BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology-Reference-Cited by-同舟云学术

BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology

Published:2020-01 Issue:1 Volume:23 Page:100769
ISSN:2589-0042
Container-title:iScience
language:en
Short-container-title:iScience

Author:

Xavier Basil B.,Mysara Mohamed,Bolzan Mattia,Ribeiro-Gonçalves Bruno,Alako Blaise T.F.,Harrison Peter,Lammens Christine,Kumar-Singh Samir,Goossens Herman,Carriço João A.,Cochrane Guy,Malhotra-Kumar Surbhi

Funder

European Union Horizon 2020 Research and Innovation Programme

Innovative Medicines Initiative

European Union’s Seventh Framework Programme

BacGenTrack

Fundação para a Ciência e a Tecnologia

Scientific and Technological Research Council of Turkey

Fundos Europeus Estruturais E De Investimento

Publisher

Elsevier BV

Subject

Multidisciplinary

Reference23 articles.

1. Genomics virtual laboratory: a practical bioinformatics workbench for the cloud;Afgan;PLoS One,2015

2. Privacy preserving processing of genomic data: a survey;Akgün;J. Biomed. Inform.,2015

3. Outbreak breakthrough: using whole-genome sequencing to control hospital infection;Arnold;Environ. Health Perspect.,2015

4. Automated reconstruction of whole-genome phylogenies from short-sequence reads;Bertels;Mol. Biol. Evol.,2014

5. VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on;Chen;Nucleic Acids Res.,2016

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