OptFill: A Tool for Infeasible Cycle-Free Gapfilling of Stoichiometric Metabolic Models-Reference-Cited by-同舟云学术

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OptFill: A Tool for Infeasible Cycle-Free Gapfilling of Stoichiometric Metabolic Models

Published:2020-01 Issue:1 Volume:23 Page:100783
ISSN:2589-0042
Container-title:iScience
language:en
Short-container-title:iScience

Author:

Schroeder Wheaton L.,Saha Rajib

Funder

Nebraska Research Initiative, United States of America

UNL

Nebraska Center for Energy Sciences Research, University of Nebraska-Lincoln

Publisher

Elsevier BV

Subject

Multidisciplinary

Reference45 articles.

1. Modeling the interplay between photosynthesis, CO2 fixation, and the quinone pool in a purple non-sulfur bacterium;Alsiyabi;Sci. Rep.,2019

2. Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus Niger;Andersen;Mol. Syst. Biol.,2008

3. KBase: the United States department of energy systems biology knowledgebase;Arkin;Nat. Biotechnol.,2018

4. Golden Rice: introducing the beta-carotene biosynthesis pathway into rice endosperm by genetic engineering to defeat vitamin A deficiency;Beyer;J. Nutr.,2002

5. Recon3D enables a three-dimensional view of gene variation in human metabolism;Brunk;Nat. Biotechnol.,2018

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2. mergem: merging, comparing, and translating genome-scale metabolic models using universal identifiers;NAR Genomics and Bioinformatics;2024-01-05

3. Machine Learning and Metabolic Model Guided CRISPRi Reveals a Central Role for Phosphoglycerate Mutase inChlamydia trachomatisPersistence;2023-12-18

4. A multi-organ maize metabolic model connects temperature stress with energy production and reducing power generation;iScience;2023-12

5. Dissecting Metabolic Landscape of Alveolar Macrophage;2023-09-12

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