Bayesian coalescent inference of hepatitis A virus populations: evolutionary rates and patterns-Reference-Cited by-同舟云学术

Bayesian coalescent inference of hepatitis A virus populations: evolutionary rates and patterns

Published:2007-11-01 Issue:11 Volume:88 Page:3039-3042
ISSN:0022-1317
Container-title:Journal of General Virology
language:en
Short-container-title:

Author:

Moratorio Gonzalo¹,Costa-Mattioli Mauro²,Piovani Rosina³,Romero Héctor³,Musto Héctor³,Cristina Juan¹

Affiliation:

1. Laboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Iguá 4225, 11400 Montevideo, Uruguay

2. Department of Biochemistry and McGill Cancer Center, McGill University, Montreal, QC H3G 1Y6, Canada

3. Laboratorio de Organización y Evolución del Genoma, Instituto de Biología, Facultad de Ciencias, Iguá 4225, 11400 Montevideo, Uruguay

Abstract

Hepatitis A virus (HAV) is a hepatotropic member of the family Picornaviridae. Previous studies suggested that HAV may evolve more slowly than other members of the family. To estimate HAV substitution rates precisely, we used a Bayesian Markov chain Monte Carlo (MCMC) approach on temporally sampled HAV VP1 full-length sequences from strains isolated in France. A mean rate of evolutionary change of 9.76×10−4 nucleotide substitution per site per year was found. The results also revealed that the synonymous rate found for HAV is lower than that of other members of the family. Bayesian skyline plots revealed a sharp decline in the effective number of infections in 1996, coinciding with the introduction of HAV vaccine.

Publisher

Microbiology Society

Subject

Virology

Reference22 articles.

1. Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998;Brown;J Virol,1999

2. Molecular evolution of hepatitis A virus: a new classification based on the complete VP1 protein;Costa-Mattioli;J Virol,2002

3. Genetic variability of hepatitis A virus;Costa-Mattioli;J Gen Virol,2003

4. Analysis of sequential hepatitis A virus strains reveals coexistence of distinct viral subpopulations;Costa-Mattioli;J Gen Virol,2006

5. Bayesian coalescent inference of past population dynamics from molecular sequences;Drummond;Mol Biol Evol,2005

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