Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.-Reference-Cited by-同舟云学术

Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.

Published:2011-04-01 Issue:4 Volume:61 Page:926-931
ISSN:1466-5026
Container-title:International Journal of Systematic and Evolutionary Microbiology
language:en
Short-container-title:

Author:

Ramos Patrícia L.¹²,Van Trappen Stefanie³,Thompson Fabiano L.⁴,Rocha Rafael C. S.⁵,Barbosa Heloiza R.⁵,De Vos Paul³,Moreira-Filho Carlos A.¹²

Affiliation:

1. Department of Pediatrics, University of São Paulo Medical School, São Paulo, Brazil

2. Biotechnology Research Center, CPB-USP, University of São Paulo, São Paulo, Brazil

3. BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Ghent University, Belgium

4. Department of Genetics, Institute of Biology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil

5. Department of Microbiology, Biomedical Sciences Institute, University of São Paulo, São Paulo, Brazil

Abstract

A Gram-negative, rod-shaped, non-spore-forming and nitrogen-fixing bacterium, designated ICB 89T, was isolated from stems of a Brazilian sugar cane variety widely used in organic farming. 16S rRNA gene sequence analysis revealed that strain ICB 89T belonged to the genus Stenotrophomonas and was most closely related to Stenotrophomonas maltophilia LMG 958T, Stenotrophomonas rhizophila LMG 22075T, Stenotrophomonas nitritireducens L2T, [Pseudomonas] geniculata ATCC 19374T, [Pseudomonas] hibiscicola ATCC 19867T and [Pseudomonas] beteli ATCC 19861T. DNA–DNA hybridization together with chemotaxonomic data and biochemical characteristics allowed the differentiation of strain ICB 89T from its nearest phylogenetic neighbours. Therefore, strain ICB 89T represents a novel species, for which the name Stenotrophomonas pavanii sp. nov. is proposed. The type strain is ICB 89T ( = CBMAI 564T = LMG 25348T).

Funder

CNPq

Biota-FAPESP Program

Publisher

Microbiology Society

Subject

General Medicine,Ecology, Evolution, Behavior and Systematics,Microbiology

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