Biochemical and genomic analysis of the denitrification pathway within the genus Neisseria

Abstract

SinceNeisseria gonorrhoeaeandNeisseria meningitidisare obligate human pathogens, a comparison with commensal species of the same genus could reveal differences important in pathogenesis. The recent completion of commensalNeisseriagenome draft assemblies allowed us to perform a comparison of the genes involved in the catalysis, assembly and regulation of the denitrification pathway, which has been implicated in the virulence of several bacteria. All species contained a highly conserved nitric oxide reductase (NorB) and a nitrite reductase (AniA or NirK) that was highly conserved in the catalytic but divergent in the N-terminal lipid modification and C-terminal glycosylation domains. OnlyNeisseria mucosacontained a nitrate reductase (Nar), and onlyNeisseria lactamica,Neisseria cinerea,Neisseria subflava,Neisseria flavescensandNeisseria siccacontained a nitrous oxide reductase (Nos) complex. The regulators of the denitrification genes, FNR, NarQP and NsrR, were highly conserved, except for the GAF domain of NarQ. Biochemical examination of laboratory strains revealed that all of the neisserial species tested exceptN. mucosahad a two- to fourfold lower nitrite reductase activity thanN. gonorrhoeae, whileN. meningitidisand most of the commensalNeisseriaspecies had a two- to fourfold higher nitric oxide (NO) reductase activity. ForN. meningitidisand most of the commensalNeisseria, there was a greater than fourfold reduction in the NO steady-state level in the presence of nitrite as compared withN. gonorrhoeae. All of the species tested generated an NO steady-state level in the presence of an NO donor that was similar to that ofN. gonorrhoeae. The greatest difference between theNeisseriaspecies was the lack of a functional Nos system in the pathogenic speciesN. gonorrhoeaeandN. meningitidis.