Yersinia canariae sp. nov., isolated from a human yersiniosis case-Reference-Cited by-同舟云学术

Yersinia canariae sp. nov., isolated from a human yersiniosis case

Published:2020-04-01 Issue:4 Volume:70 Page:2382-2387
ISSN:1466-5026
Container-title:International Journal of Systematic and Evolutionary Microbiology
language:en
Short-container-title:

Author:

Nguyen Scott V.¹^ORCID,Greig David R.²^ORCID,Hurley Daniel¹^ORCID,Donoghue Orla³^ORCID,Cao Yu¹^ORCID,McCabe Evonne¹^ORCID,Mitchell Molly¹^ORCID,Schaffer Kirsten³^ORCID,Jenkins Claire²^ORCID,Fanning Séamus¹⁴^ORCID

Affiliation:

1. UCD-Centre for Food Safety, School of Public Health, Physiotherapy & Sports Science, University College Dublin, Belfield, Dublin D04 N2E5, Ireland

2. National Infection Services, Public Health England, 61 Colindale Avenue, London NW9 5HT, UK

3. Department of Microbiology, St Vincent's University Hospital, 196 Merrion Road, Elm Park, Dublin D04 T6F4, Ireland

4. Institute for Global Food Security, Queen’s University Belfast, 19 Chlorine Gardens, Belfast BT9 5DL, UK

Abstract

A Gram-negative rod from the

Yersinia

genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within

Yersinia

, despite biochemical similarities to

Yersinia enterocolitica

. The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chromosome is CP043727. The type strain is SRR7544370T (=NCTC 14382T/=LMG 31573T).

Publisher

Microbiology Society

Subject

General Medicine,Ecology, Evolution, Behavior and Systematics,Microbiology

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