Streptomyces coriariae sp. nov., a novel streptomycete isolated from actinorhizal nodules of Coriaria intermedia

Author:

Berckx Fede1ORCID,Bandong Cyndi Mae21,Wibberg Daniel34ORCID,Kalinowski Jörn4ORCID,Willemse Joost5ORCID,Brachmann Andreas6ORCID,Simbahan Jessica2,Pawlowski Katharina1ORCID

Affiliation:

1. Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91 Stockholm, Sweden

2. Institute of Biology, College of Science, University of the Philippines, Diliman, Quezon City, Philippines

3. Present address: ELIXIR-DE, Institute of Bio- and Geosciences IBG-5 - Computational Metagenomics, Forschungszentrum Jülich GmbH, Jülich, Germany

4. Center for Biotechnology (CeBiTec), Bielefeld University, 33594 Bielefeld, Germany

5. Molecular Biotechnology, Institute of Biology, Leiden University, 2300 RA Leiden, Netherlands

6. Faculty of Biology, LMU München, 82152 Planegg-Martinsried, Germany

Abstract

An actinobacterial strain, CMB-FB, was isolated from surface-sterilized root nodules of a Coriaria intermedia plant growing along Halsema Highway in the province of Benguet (Luzon, Philippines). The 16S rRNA gene sequence of CMB-FB showed high sequence similarity to those of the type strains of Streptomyces rishiriensis (99.4 %), Streptomyces humidus (99.1 %), Streptomyces cacaoi subsp. asoensis (99.0 %), and Streptomyces phaeofaciens (98.6 %). The major menaquinones of CMB-FB were composed of MK-9(H4), MK-9(H6) and MK-9(H8), and there was a minor contribution of MK-9(H10). The polar lipid profile consisted of phosphatidylethanolamine, unidentified aminolipids and phospholipids, a glycophospholipid and four unidentified lipids. The diagnostic diamino acid of the peptidoglycan was meso-diaminopimelic acid. The major fatty acids were iso-C16 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. The results of physiological analysis indicated that CMB-FB was mesophilic. The results of phylogenetic, genome-genome distance calculation and average nucleotide identity analysis indicated that the isolated strain represents the type strain of a novel species. On the basis of these results, strain CMB-FB (=DSM 112754T=LMG 32457T) is proposed as the type strain of the novel species Streptomyces coriariae sp. nov.

Funder

Vetenskapsrådet

Bundesministerium für Forschung und Technologie

Publisher

Microbiology Society

Subject

General Medicine,Ecology, Evolution, Behavior and Systematics,Microbiology

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