Guidelines for interpreting the International Code of Nomenclature of Prokaryotes and for preparing a Request for an Opinion

Author:

Arahal David R.1,Bull Carolee T.2,Busse Hans-Jürgen3,Christensen Henrik4,Chuvochina Maria5,Dedysh Svetlana N.6,Fournier Pierre-Edouard7,Konstantinidis Konstantinos T.8,Parker Charles T.9,Rossello-Mora Ramon10,Ventosa Antonio11,Göker Markus12ORCID

Affiliation:

1. Departamento de Microbiología y Ecología, Universitat de València, Valencia, Spain

2. Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, 211 Buckhout Lab, University Park, PA 16802, USA

3. Institut für Mikrobiologie, University of Veterinary Medicine, Veterinärplatz 1, A- 1210 Wien, Austria

4. Department of Veterinary and Animal Sciences, University of Copenhagen, Stigbøjlen 4, 1870 Frederiksberg C, Denmark

5. The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, QLD 4072, Australia

6. Winogradsky Institute of Microbiology, Research Center of Biotechnology RAS, Prospect 60-letya Octyabrya 7/2, Moscow 117312, Russia

7. UMR VITROME, IHU - Méditerranée Infection, 19-21 Bd Jean Moulin, 13005 Marseille, France

8. School of Civil & Environmental Engineering and School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA

9. Names for Life, LLC, East Lansing, Okemos, Michigan 48805-0769, USA

10. Department of Animal and Microbial Biodiversity, Institut Mediterrani d’Estudis Avançats, CSIC-UIB, C/Miquel Marqués 21, 07190 Esporles, Illes Balears, Spain

11. Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, ES-41012 Sevilla, C/. Prof. Garcia Gonzalez 2, Spain

12. Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, D-38124 Braunschweig, Germany

Abstract

In this paper the Judicial Commission provides general guidance for interpreting the International Code of Nomenclature of Prokaryotes (ICNP) and specific assistance to authors, reviewers and editors of a Request for an Opinion, or of other suggestions related to the ICNP. The role of the Judicial Commission is recapitulated, particularly with respect to the processing of such Requests. Selected kinds of nomenclature-related proposals are discussed that are unsuitable as the basis for a Request. Particular emphasis is put on Requests for placing names or epithets on the list ofnomina rejicienda, and a dichotomous identification key is provided to guide potential authors of a Request that targets the name of a species or subspecies because of issues with its type strain. To this end, the criteria for the valid publication of such names under the ICNP are revisited. Aspects of other kinds of Requests are also addressed. The study is based on a comprehensive review of all Judicial Opinions issued since the publication of the Approved Lists in 1980. One goal of this paper is to assist potential authors in deciding whether their concern should be the subject of a Request, and if so, in composing it with the greatest chance of success. It is also clarified how to obtain additional help regarding nomenclature-related issues.

Publisher

Microbiology Society

Subject

General Medicine,Ecology, Evolution, Behavior and Systematics,Microbiology

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