Jeotgalibaca ciconiae sp. nov., isolated from the faeces of an Oriental stork

Author:

Lee So-Yeon1,Kang Woorim1,Kim Pil Soo1,Kim Hyun Sik1,Sung Hojun1,Shin Na-Ri1,Yun Ji-Hyun1,Lee Jae-Yun1,Lee June-Young1,Jung Mi-Ja1,Jeong Yun-Seok1,Tak Euon Jung1,Han Jeong Eun1,Hyun Dong-Wook1,Kang Myung-Suk2,Lee Ki-Eun3,Lee Byoung-Hee3,Bae Jin-Woo1ORCID

Affiliation:

1. Department of Biology and Department of Life and Nanopharmaceutical Sciences, Kyung Hee University, Seoul 02447, Republic of Korea

2. Biological Resources Utilization Department, National Institute of Biological Resources, Incheon, Republic of Korea

3. Microorganism Resources Division, National Institute of Biological Resources, Incheon, Republic of Korea

Abstract

A novel, Gram-stain-positive, non-spore-forming, facultatively anaerobic bacterium, designated strain H21T32T, was isolated from the faeces of an Oriental stork, Ciconia boyciana. Cells formed cocci grouped in pairs, tetrads or conglomerates, and colonies on solid medium were pale yellow. Strain H21T32T belonged to the genus Jeotgalibaca , family Carnobacteriaceae , order Lactobacillales and class Bacilli . The 16S rRNA gene sequences of the strain showed 97.06–97.34, 96.17–96.31 and 95.93–96.07 % similarity to the type strains of Jeotgalibaca arthritidis , J. porci and J. dankookensis , respectively. The strain grew at 10–37 °C (optimum temperature: 30 °C), with 0–7 % (w/v) NaCl (optimum salinity: 0.5 %) and at pH 7–9 (optimum pH: 8). The main cellular fatty acids were C16 : 1 ω9c, C18 : 1 ω9c and C16 : 0. The major polar lipids were diphosphatidylglycerol and phosphatidylglycerol. Respiratory quinones were not detected. Sugar components of the peptidoglycan were rhamnose, ribose and glucose. Amino acid components of the cell wall were l-alanine, d-glucose, l-lysine, glycine and aspartic acid. The DNA G+C content of the strain was 37.1 mol%. Average nucleotide identity between strain H21T32T and J. arthritidis CECT 9157T was 77.02 %, confirming that strain H21T32T represents a novel species of the genus Jeotgalibaca , for which the name Jeotgalibaca ciconiae sp. nov. is proposed. The type strain is H21T32T (=KCTC 33991T=JCM 33222T).

Funder

Collaborative Genome Program for Fostering New Post-Genome Industry

Mid-Career Researcher Program

Bio & Medical Technology Development Program

Ministry of Science ICT & Future Planning; the NRF grant was funded by the Korean government

National Institute of Biological Resources (NIBR) was funded by the Ministry of Environment (MOE) of the Republic of Korea

Publisher

Microbiology Society

Subject

General Medicine,Ecology, Evolution, Behavior and Systematics,Microbiology

Reference34 articles.

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2. Jeotgalibaca porci sp. nov. and Jeotgalibaca arthritidis sp. nov., isolated from pigs, and emended description of the genus Jeotgalibaca

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4. Ciconia boyciana, The IUCN Red List of Threatened Species. IUCN,2018

5. Diet–microbiota interactions as moderators of human metabolism

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