Author:
Гарбузинский С.А.,Garbuzynskiy S.O.
Publisher
Institute of Mathematical Problems of Biology of RAS (IMPB RAS)
Subject
Applied Mathematics,Biomedical Engineering
Reference20 articles.
1. Salmon J.K., Shah Y., Wriggers W. Atom-level characterization of structural dynamics of proteins. Science. 2010;330:341–346.
2. Lindorff-Larsen K., Piana S., Palmo K., Maragakis P., Klepeis J.L., Dror R.O., Shaw D.E. Improved side-chain torsion potentials for the Amber ff99SB protein force field. Proteins: Struct. Funct. Bioinf. 2010;78:1950–1958.
3. Levitt M., Hirshberg M., Sharon R., Daggett V. Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution. Comput. Phys. Commun. 1995;91:215–231.
4. MacKerell A.D., Jr., Bashford D., Bellott M., Dunbrack R.L., Jr., Evanseck J.D., Field M.J., Fischer S., Gao J., Guo H., Ha S., Joseph-McCarthy D., Kuchnir L., Kuczera K., Lau F.T.K., Mattos C., Michnick S., Ngo T., Nguyen D.T., Prodhom B., Reiher W.E., III, Roux B., Schlenkrich M., Smith J.C., Stote R., Straub J., Watanabe M., Wiorkiewicz-Kuczera J., Yin D., Karplus M. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B. 1998;102:3586–3616.
5. Jorgensen W.L., Maxwell D.S., Tirado-Rives J. Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids. J. Am. Chem. Soc. 1996;118:11225–11236.