Specificity of broad protein interaction surfaces for proteins with multiple binding partners-Reference-Cited by-同舟云学术

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Specificity of broad protein interaction surfaces for proteins with multiple binding partners

Published:2016 Issue:0 Volume:13 Page:105-115
ISSN:2189-4779
Container-title:Biophysics and Physicobiology
language:en
Short-container-title:BIOPHYSICS

Author:

Uchikoga Nobuyuki¹,Matsuzaki Yuri²,Ohue Masahito³,Akiyama Yutaka²³

Affiliation:

1. Department of Physics, Faculty of Science and Engineering, Chuo University

2. Education Academy of Computational Life Sciences, Tokyo Institute of Technology

3. Department of Computer Science, Graduate School of Information Science and Engineering, Tokyo Institute of Technology

Publisher

Biophysical Society of Japan

Subject

General Medicine

Link

https://www.jstage.jst.go.jp/article/biophysico/13/0/13_105/_pdf

Reference17 articles.

1. [3] Patil, A., Kinoshita, K. & Nakamura, H. Hub promiscuity in protein-protein interaction networks. Int. J. Mol. Sci. 11, 1930–1943 (2010).

2. [4] Matsuzaki, Y., Ohue, M., Uchikoga, N. & Akiyama, Y. Protein-protein interaction network prediction by using rigid-body docking tools: application to bacterial chemotaxis. Protein Pept. Lett. 21, 790–798 (2014).

3. [5] Ohue, M., Matsuzaki, Y., Uchikoga, N., Ishida, T. & Akiyama, Y. MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data. Protein Pept. Lett. 21, 766–778 (2014).

4. [8] Kinoshita, K. & Nakamura, H. Identification of protein biochemical functions by similarity search using the molecular surface database eF-site. Protein Sci. 12, 1589–1595 (2003).

5. [11] Marcou, G. & Rognan, D. Optimizing fragment and scaffold docking by use of molecular interaction fingerprints. J. Chem. Inf. Model. 47, 195–207 (2007).

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