Similarity search for local protein structures at atomic resolution by exploiting a database management system
Author:
Affiliation:
1. Institute for Protein Research, Osaka University
Publisher
Biophysical Society of Japan
Subject
Biophysics
Link
http://www.jstage.jst.go.jp/article/biophysics/3/0/3_0_75/_pdf
Reference34 articles.
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3. 3. Kinoshita, K. & Nakamura, H. Identification of protein biochemical functions by similarity search using the molecular surface database eF-site. Protein Sci. 12, 1589–1595 (2003).
4. Towards a structural classification of phosphate binding sites in protein-nucleotide complexes: An automated all-against-all structural comparison using geometric matching
5. 5. Wallace, A. C., Borkakoti, N. & Thornton, J. M. TESS: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. application to enzyme active sites. Protein Sci. 6, 2308–2323 (1997).
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