RECFMM: Recursive Parallelization of the Adaptive Fast Multipole Method for Coulomb and Screened Coulomb Interactions

Author:

Zhang Bo,Huang Jingfang,Pitsianis Nikos P.,Sun Xiaobai

Abstract

AbstractWe present RECFMM, a program representation and implementation of a recursive scheme for parallelizing the adaptive fast multipole method (FMM) on shared-memory computers. It achieves remarkable high performance while maintaining mathematical clarity and flexibility. The parallelization scheme signifies the recursion feature that is intrinsic to the FMM but was not well exploited. The program modules of RECFMM constitute a map between numerical computation components and advanced architecture mechanisms. The mathematical structure is preserved and exploited, not obscured nor compromised, by parallel rendition of the recursion scheme. Modern software system—CILK in particular, which provides graph-theoretic optimal scheduling in adaptation to the dynamics in parallel execution—is employed. RECFMM supports multiple algorithm variants that mark the major advances with low-frequency interaction kernels, and includes the asymmetrical version where the source particle ensemble is not necessarily the same as the target particle ensemble. We demonstrate parallel performance with Coulomb and screened Coulomb interactions.

Publisher

Global Science Press

Subject

Physics and Astronomy (miscellaneous)

Reference12 articles.

1. A New Version of the Fast Multipole Method for Screened Coulomb Interactions in Three Dimensions

2. Zhang B. , Huang J. , Pitsianis N. P. , and Sun X. . Dynamic prioritization for parallel traversal of irregularly structured spatio-temporal graphs. In Proceedings of 3rd USENIX Workshop on Hot Topics in Parallelism, 2011.

3. Cilk: An Efficient Multithreaded Runtime System

4. Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy

5. A Fast Adaptive Multipole Algorithm for Particle Simulations

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