Host gene expression classifiers diagnose acute respiratory illness etiology

Author:

Tsalik Ephraim L.123,Henao Ricardo14,Nichols Marshall1,Burke Thomas1,Ko Emily R.15,McClain Micah T.136,Hudson Lori L.1,Mazur Anna1,Freeman Debra H.13,Veldman Tim1,Langley Raymond J.7,Quackenbush Eugenia B.8,Glickman Seth W.8,Cairns Charles B.89,Jaehne Anja K.10,Rivers Emanuel P.10,Otero Ronny M.10,Zaas Aimee K.13,Kingsmore Stephen F.11,Lucas Joseph1,Fowler Vance G.3,Carin Lawrence14,Ginsburg Geoffrey S.1,Woods Christopher W.136

Affiliation:

1. Center for Applied Genomics and Precision Medicine, Department of Medicine, Duke University, Durham, NC 27708, USA.

2. Emergency Medicine Service, Durham Veteran’s Affairs Medical Center, Durham, NC 27705, USA.

3. Division of Infectious Diseases and International Health, Department of Medicine, Duke University, Durham, NC 27710, USA.

4. Department of Electrical and Computer Engineering, Duke University, Durham, NC 27708, USA.

5. Duke Regional Hospital, Department of Medicine, Duke University, Durham, NC 27710, USA.

6. Section for Infectious Diseases, Medicine Service, Durham Veteran’s Affairs Medical Center, Durham, NC 27705, USA.

7. Immunology Division, Lovelace Respiratory Research Institute, Albuquerque, NM 87108, USA.

8. Department of Emergency Medicine, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA.

9. Department of Emergency Medicine, University of Arizona Health Sciences Center, Tucson, AZ 85724, USA.

10. Department of Emergency Medicine, Henry Ford Hospital, Wayne State University, Detroit, MI 48202, USA.

11. Rady Pediatric Genomic and Systems Medicine Institute, Rady Children’s Hospital, San Diego, CA 92123, USA.

Abstract

Pathogen-specific host gene expression changes may combat inappropriate antibiotic use and emerging antibiotic resistance.

Funder

U.S. DARPA

NIH

Publisher

American Association for the Advancement of Science (AAAS)

Subject

General Medicine

Reference41 articles.

1. World Health Organization Mortality and burden of disease: Cause-specific mortality 2008: WHO regions. Available at http://apps.who.int/ghodata/ (accessed on Nov 8 2011). Global Health Observatory Data Repository (2011).

2. Antibiotic prescribing for adults in ambulatory care in the USA, 2007–09

3. Outpatient antibiotic prescribing in the United States: 2000 to 2010

4. Antibiotic resistance: the perfect storm

5. Observations on spiraling empiricism: its causes, allure, and perils, with particular reference to antibiotic therapy

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