Diagnosis of genetic diseases in seriously ill children by rapid whole-genome sequencing and automated phenotyping and interpretation

Author:

Clark Michelle M.1ORCID,Hildreth Amber123ORCID,Batalov Sergey1ORCID,Ding Yan1ORCID,Chowdhury Shimul1,Watkins Kelly1ORCID,Ellsworth Katarzyna1ORCID,Camp Brandon1,Kint Cyrielle I.4,Yacoubian Calum5,Farnaes Lauge12,Bainbridge Matthew N.16,Beebe Curtis7,Braun Joshua J. A.1ORCID,Bray Margaret8ORCID,Carroll Jeanne12ORCID,Cakici Julie A.1,Caylor Sara A.1,Clarke Christina1,Creed Mitchell P.9ORCID,Friedman Jennifer110,Frith Alison5,Gain Richard5,Gaughran Mary1,George Shauna7ORCID,Gilmer Sheldon7ORCID,Gleeson Joseph110ORCID,Gore Jeremy11ORCID,Grunenwald Haiying12ORCID,Hovey Raymond L.1ORCID,Janes Marie L.1ORCID,Lin Kejia7ORCID,McDonagh Paul D.8,McBride Kyle7,Mulrooney Patrick1ORCID,Nahas Shareef1ORCID,Oh Daeheon1ORCID,Oriol Albert7ORCID,Puckett Laura1,Rady Zia1,Reese Martin G.13,Ryu Julie12,Salz Lisa1ORCID,Sanford Erica12,Stewart Lawrence7ORCID,Sweeney Nathaly12,Tokita Mari1,Van Der Kraan Luca1ORCID,White Sarah1,Wigby Kristen12,Williams Brett5ORCID,Wong Terence1,Wright Meredith S.1,Yamada Catherine1,Schols Peter4,Reynders John8ORCID,Hall Kevin12ORCID,Dimmock David1ORCID,Veeraraghavan Narayanan1ORCID,Defay Thomas8,Kingsmore Stephen F.1ORCID

Affiliation:

1. Rady Children’s Institute for Genomic Medicine, San Diego, CA 92123, USA.

2. Department of Pediatrics, University of California San Diego, San Diego, CA 92093, USA.

3. Department of Pediatrics, University of Washington, Seattle, WA 98195, USA.

4. Diploid, 3001 Leuven, Belgium.

5. Clinithink Ltd., London N1 6DR, UK.

6. Codified Genomics, LLC, Houston, TX 77033, USA.

7. Rady Children’s Hospital, San Diego, CA 92123, USA.

8. Alexion Pharmaceuticals Inc., New Haven, CT 06510, USA.

9. University of Kansas School of Medicine, Kansas City, MO 66160, USA.

10. Department of Neurosciences, University of California San Diego, San Diego, CA 92093, USA.

11. Tessella, Needham, MA 02494, USA.

12. Illumina Inc., San Diego, CA 92122, USA.

13. Fabric Genomics Inc., Oakland, CA 94612, USA.

Abstract

Automated phenotyping and interpretation of rapid whole-genome sequencing improve time to diagnosis of genetic diseases in hospitalized children.

Funder

National Institutes of Health

Publisher

American Association for the Advancement of Science (AAAS)

Subject

General Medicine

Reference77 articles.

1. White paper on the study of birth defects

2. March of Dimes Foundation Data Book for Policy Makers: Maternal Infant and Child Health in the United States 2016 (March of Dimes 2016); www.marchofdimes.org/March-of-Dimes-2016-Databook.pdf.

3. Mortality in the United States, 2017;Murphy S. L.;NCHS Data Brief,2018

4. Contribution of Birth Defects and Genetic Diseases to Pediatric Hospitalizations

5. Inpatient Hospitalization Costs Associated with Birth Defects Among Persons of All Ages — United States, 2013

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