From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish

Author:

Luo Jing1ORCID,Chai Jing12ORCID,Wen Yanling234ORCID,Tao Min5ORCID,Lin Guoliang1ORCID,Liu Xiaochuan1ORCID,Ren Li5,Chen Zeyu3,Wu Shigang6,Li Shengnan5,Wang Yude5ORCID,Qin Qinbo5,Wang Shi5,Gao Yun2,Huang Feng1,Wang Lu1,Ai Cheng6ORCID,Wang Xiaobo6,Li Lianwei2ORCID,Ye Chengxi27,Yang Huimin1ORCID,Luo Mi5,Chen Jie5,Hu Hong5,Yuan Liujiao5,Zhong Li1,Wang Jing1,Xu Jian8ORCID,Du Zhenglin3,Ma Zhanshan (Sam)2,Murphy Robert W.29ORCID,Meyer Axel10ORCID,Gui Jianfang11ORCID,Xu Peng12ORCID,Ruan Jue613ORCID,Chen Z. Jeffrey1415ORCID,Liu Shaojun5ORCID,Lu Xuemei23164ORCID,Zhang Ya-ping12ORCID

Affiliation:

1. State Key Laboratory for Conservation and Utilization of Bio-resource and School of Life Sciences, Yunnan University, Kunming, 650091 Yunnan, China.

2. State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223 Yunnan, China.

3. CAS Key Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.

4. University of Chinese Academy of Sciences, Beijing 100049, China.

5. State Key Laboratory of Developmental Biology of Freshwater Fish and College of Life Sciences, Hunan Normal University, Changsha, 410081 Hunan, China.

6. Agricultural Genomics Institute, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.

7. Department of Computer Science, University of Maryland, College Park, MD 20742, USA.

8. Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing 100141, China.

9. Centre for Biodiversity and Conservation Biology, Royal Ontario Museum, Toronto, ON M5S 2C6, Canada.

10. Department of Biology, University of Konstanz, Konstanz 78457, Germany.

11. State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Innovation Academy for Seed Design, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Wuhan 430072, China.

12. College of Ocean and Earth Sciences, Xiamen University, Xiamen, 361102 Fujian, China.

13. Peng Cheng Laboratory, Shenzhen 518052, China.

14. State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, 210095 Jiangsu, China.

15. Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712-0159, USA.

16. CAS Center for Excellence in Animal Evolution and Genetics, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223 Yunnan, China.

Abstract

Allotetraploid cyprinids have a unique strategy for balancing subgenomic stabilization and diversification in rediploidization.

Funder

National Natural Science Foundation of China

Earmarked Fund for China Agriculture Research System

Hunan Provincial Natural Science and Technology Major Project

The Second Tibetan Plateau Scientific Expedition and Research Program

CAS "Light of West China" Program

Yunnan Provincial Science and Technology Department

National Postdoctoral Program for Innovative Talents

China Postdoctoral Science Foundation

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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