Global homogenization of the structure and function in the soil microbiome of urban greenspaces

Author:

Delgado-Baquerizo Manuel1ORCID,Eldridge David J.2ORCID,Liu Yu-Rong3ORCID,Sokoya Blessing4,Wang Jun-Tao5,Hu Hang-Wei67,He Ji-Zheng67ORCID,Bastida Felipe8ORCID,Moreno José L.8ORCID,Bamigboye Adebola R.9,Blanco-Pastor José L.10ORCID,Cano-Díaz Concha11ORCID,Illán Javier G.12ORCID,Makhalanyane Thulani P.13ORCID,Siebe Christina14ORCID,Trivedi Pankaj15,Zaady Eli16ORCID,Verma Jay Prakash17ORCID,Wang Ling18,Wang Jianyong18ORCID,Grebenc Tine19ORCID,Peñaloza-Bojacá Gabriel F.20ORCID,Nahberger Tina U.19ORCID,Teixido Alberto L.21ORCID,Zhou Xin-Quan3,Berdugo Miguel2223ORCID,Duran Jorge24,Rodríguez Alexandra24ORCID,Zhou Xiaobing25,Alfaro Fernando2627ORCID,Abades Sebastian27ORCID,Plaza Cesar28ORCID,Rey Ana29ORCID,Singh Brajesh K.530ORCID,Tedersoo Leho31ORCID,Fierer Noah432ORCID

Affiliation:

1. Departamento de Sistemas Físicos, Químicos y Naturales, Universidad Pablo de Olavide, 41013 Sevilla, Spain.

2. Centre for Ecosystem Science, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia.

3. College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China.

4. Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO 80309, USA.

5. Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales 2751, Australia.

6. Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.

7. Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, School of Geographical Science, Fujian Normal University, Fuzhou 350007, China.

8. CEBAS-CSIC, Department of Soil and Water Conservation, Campus Universitario de Espinardo, 30100, Murcia, Spain.

9. Natural History Museum (Botany Unit), Obafemi Awolowo University, Ile-Ife, Nigeria.

10. INRAE, UR4 (URP3F), Centre Nouvelle-Aquitaine-Poitiers, 86600 Lusignan, France.

11. Biología y Geología, Física y Química Inorgánica, Universidad Rey Juan Carlos, Móstoles 28933, Spain.

12. Department of Entomology, Washington State University, Pullman, WA 99164, USA.

13. Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria 0028, South Africa.

14. Instituto de Geología, Universidad Nacional Autónoma de México, Ciudad Universitaria, México D.F. CP 04510, México.

15. Microbiome Network and Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA.

16. Department of Natural Resources, Agricultural Research Organization, Institute of Plant Sciences, Gilat Research Center, Mobile Post Negev, Gilat 8531100, Israel.

17. Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, 221005 Uttar Pradesh, India.

18. Institute of Grassland Science/School of Life Science, Northeast Normal University, and Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, Jilin 130024, China.

19. Department of Forest Physiology and Genetics, Slovenian Forestry Institute, Ljubljana, Slovenia.

20. Laboratório de Sistemática Vegetal, Departamento de Botânica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, Pampulha, Belo Horizonte, 31270-901 MG, Brazil.

21. Departamento de Botância e Ecologia, Instituto de Biociências, Universidade Federal de Mato Grosso, Av. Fernando Corrêa, 2367, Boa Esperança, Cuiabá, 78060-900 MT, Brazil.

22. Institut de Biologia Evolutiva (UPF-CSIC), 08003 Barcelona, Spain.

23. Institute of Integrative Biology, Department of Environment Systems Science, ETH Zurich, Univeritätstrasse 16, 8092 Zürich, Switzerland.

24. Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, 3000-456 Coimbra, Portugal.

25. State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.

26. GEMA Center for Genomics, Ecology and Environment, Faculty of Interdisciplinary Studies, Universidad Mayor, Santiago, Chile.

27. Instituto de Ecología y Biodiversidad (IEB), CP 7800003 Santiago, Chile.

28. Instituto de Ciencias Agrarias, Consejo Superior de Investigaciones Científicas, Serrano 115 bis, 28006 Madrid, Spain.

29. Museo Nacional de Ciencias Naturales, Consejo Superior de Investigaciones Científicas, Serrano 115 bis, 28006 Madrid, Spain.

30. Global Centre for Land-Based Innovation, Western Sydney University, Penrith South DC, New South Wales 2751, Australia.

31. Department of Mycology and Microbiology, University of Tartu, Ravila 14a, 50411 Tartu, Estonia.

32. Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA.

Abstract

This study provides new insights into how the soil microbiome of urban greenspaces differs from surrounding natural ecosystems.

Funder

National Science Foundation

Fundacion BBVA

British Ecological Society

Australian Research Council

Estonian Science Foundation

Ministerio de Ciencia e Innovacion

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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