Patterns of eukaryotic diversity from the surface to the deep-ocean sediment-Reference-Cited by-同舟云学术

Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

Published:2022-02-04 Issue:5 Volume:8 Page:
ISSN:2375-2548
Container-title:Science Advances
language:en
Short-container-title:Sci. Adv.

Author:

Cordier Tristan¹²^ORCID,Angeles Inès Barrenechea¹³^ORCID,Henry Nicolas⁴⁵^ORCID,Lejzerowicz Franck⁶⁷,Berney Cédric⁴⁵^ORCID,Morard Raphaël⁸^ORCID,Brandt Angelika⁹¹⁰^ORCID,Cambon-Bonavita Marie-Anne¹¹^ORCID,Guidi Lionel¹²^ORCID,Lombard Fabien¹²¹³^ORCID,Arbizu Pedro Martinez¹⁴¹⁵,Massana Ramon¹⁶^ORCID,Orejas Covadonga¹⁷^ORCID,Poulain Julie⁵¹⁸^ORCID,Smith Craig R.¹⁹^ORCID,Wincker Patrick⁵¹⁸,Arnaud-Haond Sophie²⁰^ORCID,Gooday Andrew J.²¹²²^ORCID,de Vargas Colomban⁴⁵^ORCID,Pawlowski Jan¹²³²⁴^ORCID

Affiliation:

1. Department of Genetics and Evolution, University of Geneva, Geneva, Switzerland.

2. NORCE Climate, NORCE Norwegian Research Centre AS, Bjerknes Centre for Climate Research, Jahnebakken 5, 5007 Bergen, Norway.

3. Department of Earth Sciences, University of Geneva, Geneva, Switzerland.

4. Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR 7144, ECOMAP,, 29680 Roscoff, France.

5. Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 75016 Paris, France.

6. Center for Microbiome Innovation, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

7. Department of Pediatrics, School of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

8. MARUM-Center for Marine Environmental Sciences, University of Bremen, Leobener Strasse 8, 28359 Bremen, Germany.

9. Department of Marine Zoology, Section Crustacea, Senckenberg Research Institute and Natural History Museum, Senckenberganlage 25, 60325 Frankfurt, Germany.

10. Institute for Ecology, Evolution, and Diversity, Goethe-University of Frankfurt, FB 15, Max-von-Laue-Str. 13, 60439 Frankfurt am Main, Germany.

11. Univ Brest, Ifremer, CNRS, Laboratoire de Microbiologie des Environnements Extrêmes, Plouzané, France.

12. Laboratoire d’océanographie de Villefranche (LOV), Observatoire Océanologique, Sorbonne Universités, UPMC Université Paris 06, CNRS, Villefranche-sur-Mer, 06230 Nice, France.

13. Institut Universitaire de France (IUF), Paris, France.

14. Senckenberg am Meer, German Centre for Marine Biodiversity Research, Südstrand 44, 26382 Wilhelmshaven, Germany.

15. FK V IBU, AG Marine Biodiversität, Universität Oldenburg, 26129 Oldenburg, Germany.

16. Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain.

17. Spanish Institute of Oceanography (IEO), Oceanographic Centre of Gijón,, Avda Príncipe de Asturias 70 bis, 33212 Gijón, Spain.

18. Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, University Evry, University Paris-Saclay, 91057 Evry, France.

19. Department of Oceanography, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.

20. MARBEC, Université de Montpellier, Ifremer, CNRS, IRD, Sète, France.

21. National Oceanography Centre, Southampton, European Way, Southampton SO14 3ZH, UK.

22. Life Sciences Department, Natural History Museum, Cromwell Road, London SW7 5BD, UK.

23. ID-Gene ecodiagnostics, Confignon, 1232 Geneva, Switzerland.

24. Institute of Oceanology, Polish Academy of Sciences, 81-712 Sopot, Poland.

Abstract

Remote deep-ocean sediment (DOS) ecosystems are among the least explored biomes on Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic organisms from sinking plankton. Here, we compare global-scale eukaryotic DNA metabarcoding datasets (18S-V9) from abyssal and lower bathyal surficial sediments and euphotic and aphotic ocean pelagic layers to distinguish plankton from benthic diversity in sediment material. Based on 1685 samples collected throughout the world ocean, we show that DOS diversity is at least threefold that in pelagic realms, with nearly two-thirds represented by abundant yet unknown eukaryotes. These benthic communities are spatially structured by ocean basins and particulate organic carbon (POC) flux from the upper ocean. Plankton DNA reaching the DOS originates from abundant species, with maximal deposition at high latitudes. Its seafloor DNA signature predicts variations in POC export from the surface and reveals previously overlooked taxa that may drive the biological carbon pump.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference94 articles.

1. Ecosystem function and services provided by the deep sea

2. The deep ocean under climate change

3. Declining oxygen in the global ocean and coastal waters

4. Deep-Sea Misconceptions Cause Underestimation of Seabed-Mining Impacts

5. Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning

Cited by 47 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. The dilemma of underestimating freshwater biodiversity: morphological and molecular approaches;2024-01-25

2. Eukaryotic diversity patterns in the Red Sea: from the surface to the deep;Frontiers in Marine Science;2024-01-08

3. Biogeographic patterns of micro-eukaryotic generalists and specialists and their effects on regional α-diversity at inter-oceanic scale;Marine Environmental Research;2024-01

4. Diversity hotspots on the benthos—Case studies highlight hidden treasures;Assessments and Conservation of Biological Diversity from Coral Reefs to the Deep Sea;2024

5. Discovery of Prevalent Ciliophora, Discoba, and Copepoda Protists in Deep Sea Water by In Situ Nucleotide Extraction;Journal of Marine Science and Engineering;2023-12-26