Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds

Author:

Ji Yanzhu12ORCID,Feng Shaohong345ORCID,Wu Lei16ORCID,Fang Qi37ORCID,Brüniche-Olsen Anna8,DeWoody J. Andrew9ORCID,Cheng Yalin1ORCID,Zhang Dezhi1ORCID,Hao Yan1ORCID,Song Gang1ORCID,Qu Yanhua1ORCID,Suh Alexander1011,Zhang Guojie4512713ORCID,Hackett Shannon J.2ORCID,Lei Fumin1614ORCID

Affiliation:

1. Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.

2. Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL 60605, USA.

3. BGI-Shenzhen, Beishan Industrial Zone, Shenzhen 518083, China.

4. Future Health Laboratory, Innovation Center of Yangtze River Delta, Zhejiang University, Jiaxing 314100, China.

5. Evolutionary and Organismal Biology Research Center, Zhejiang University School of Medicine, Hangzhou, China.

6. University of the Chinese Academy of Sciences, Beijing 100049, China.

7. Villum Centre for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen DK-2200, Denmark.

8. Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen DK-2200, Denmark.

9. Departments of Forestry and Natural Resources and Biological Sciences, Purdue University, West Lafayette, IN 47906, USA.

10. School of Biological Sciences, Organism and Environment, University of East Anglia, NR4 7TU, Norwich, UK.

11. Department of Organismal Biology, Systematic Biology, Evolutionary Biology Centre (EBC), Science for Life Laboratory, Uppsala University, Uppsala SE-752 36, Sweden.

12. Liangzhu Laboratory, Zhejiang University Medical Center, Hangzhou 311121, China.

13. State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.

14. Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650201, China.

Abstract

The rate of mutation accumulation in germline cells can be affected by cell replication and/or DNA damage, which are further related to life history traits such as generation time and body mass. Leveraging the existing datasets of 233 neoavian bird species, here, we investigated whether generation time and body mass contribute to the interspecific variation of orthologous microsatellite length, transposable element (TE) length, and deletion length and how these genomic attributes affect genome sizes. In nonpasserines, we found that generation time is correlated to both orthologous microsatellite length and TE length, and body mass is negatively correlated to DNA deletions. These patterns are less pronounced in passerines. In all species, we found that DNA deletions relate to genome size similarly as TE length, suggesting a role of body mass dynamics in genome evolution. Our results indicate that generation time and body mass shape the evolution of genomic attributes in neoavian birds.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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