From Sequence to Chromosome: The Tip of the X Chromosome of D. melanogaster

Author:

Benos Panayiotis V.1,Gatt Melanie K.23,Ashburner Michael12,Murphy Lee4,Harris David4,Barrell Bart4,Ferraz Concepcion5,Vidal Sophie5,Brun Christine5,Demailles Jacques5,Cadieu Edouard6,Dreano Stephane6,Gloux Stéphanie6,Lelaure Valerie6,Mottier Stephanie6,Galibert Francis6,Borkova Dana7,Minana Belen7,Kafatos Fotis C.7,Louis Christos89,Sidén-Kiamos Inga8,Bolshakov Slava78,Papagiannakis George8,Spanos Lefteris8,Cox Sarah8,Madueño Encarnación10,Pablos Beatriz de10,Modolell Juan10,Peter Annette11,Schöttler Petra11,Werner Meike11,Mourkioti Foteini11,Beinert Nicole11,Dowe Gordon11,Schäfer Ulrich11,Jäckle Herbert11,Bucheton Alain5,Callister Deborah M.3,Campbell Lorna A.3,Darlamitsou Areti3,Henderson Nadine S.3,McMillan Paul J.3,Salles Cathy3,Tait Evelyn A.3,Valenti Phillipe3,C. Robert D.,Saunders 312,Glover David M.23

Affiliation:

1. The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton Hall, Cambridge CB10 1SD, UK.

2. Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK.

3. Department of Anatomy and Physiology, Cancer Research Campaign Cell Cycle Genetics Group, University of Dundee, Dundee DD1 4HN, UK.

4. Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

5. Montpellier University Medical School, Institut de Génétique Humaine (IGH), CNRS, 114 Rue de la Cardonille, 34396 Montpellier Cedex 5, France.

6. UnitéPropre de Recherche 41, CNRS, Recombinaisons Genetiques, Faculte de Medecine, 2 Avenue du Pr Leon Bernard, 35043 Rennes Cedex, France.

7. European Molecular Biology Laboratory, Heidelberg, Germany.

8. Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology–Hellas, Heraklion, Greece.

9. Department of Biology, University of Crete, Heraklion, Greece.

10. Centro de Biologı́a Molecular Severo Ochoa, Consejo Superior de Investigaciones Cientifı́cas and Universidad Autónoma de Madrid, 28049 Madrid, Spain.

11. Max-Planck-Institut für Biophysikalische Chemie, Department of Molecular Developmental Biology, D-37070 Göttingen, Germany.

12. Department of Biological Sciences, The Open University, Milton Keynes MK7 6AA, UK.

Abstract

One of the rewards of having a Drosophila melanogaster whole-genome sequence will be the potential to understand the molecular bases for structural features of chromosomes that have been a long-standing puzzle. Analysis of 2.6 megabases of sequence from the tip of the X chromosome of Drosophila identifies 273 genes. Cloned DNAs from the characteristic bulbous structure at the tip of the X chromosome in the region of the broad complex display an unusual pattern of in situ hybridization. Sequence analysis revealed that this region comprises 154 kilobases of DNA flanked by 1.2-kilobases of inverted repeats, each composed of a 350–base pair satellite related element. Thus, some aspects of chromosome structure appear to be revealed directly within the DNA sequence itself.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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