The coffee genome provides insight into the convergent evolution of caffeine biosynthesis-Reference-Cited by-同舟云学术

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

Published:2014-09-05 Issue:6201 Volume:345 Page:1181-1184
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Denoeud France¹²³,Carretero-Paulet Lorenzo⁴,Dereeper Alexis⁵,Droc Gaëtan⁶,Guyot Romain⁷,Pietrella Marco⁸,Zheng Chunfang⁹,Alberti Adriana¹,Anthony François⁵,Aprea Giuseppe⁸,Aury Jean-Marc¹,Bento Pascal¹,Bernard Maria¹,Bocs Stéphanie⁶,Campa Claudine⁷,Cenci Alberto⁵¹⁰,Combes Marie-Christine⁵,Crouzillat Dominique¹¹,Da Silva Corinne¹,Daddiego Loretta¹²,De Bellis Fabien⁶,Dussert Stéphane⁷,Garsmeur Olivier⁶,Gayraud Thomas⁷,Guignon Valentin¹⁰,Jahn Katharina⁹¹³¹⁴,Jamilloux Véronique¹⁵,Joët Thierry⁷,Labadie Karine¹,Lan Tianying⁴¹⁶,Leclercq Julie⁶,Lepelley Maud¹¹,Leroy Thierry⁶,Li Lei-Ting¹⁷,Librado Pablo¹⁸,Lopez Loredana¹²,Muñoz Adriana¹⁹²⁰,Noel Benjamin¹,Pallavicini Alberto²¹,Perrotta Gaetano¹²,Poncet Valérie⁷,Pot David⁶,Priyono ²²,Rigoreau Michel¹¹,Rouard Mathieu¹⁰,Rozas Julio¹⁸,Tranchant-Dubreuil Christine⁷,VanBuren Robert¹⁷,Zhang Qiong¹⁷,Andrade Alan C.²³,Argout Xavier⁶,Bertrand Benoît²⁴,de Kochko Alexandre⁷,Graziosi Giorgio²¹²⁵,Henry Robert J²⁶,Jayarama ²⁷,Ming Ray¹⁷,Nagai Chifumi²⁸,Rounsley Steve²⁹,Sankoff David⁹,Giuliano Giovanni⁸,Albert Victor A.⁴,Wincker Patrick¹²³,Lashermes Philippe⁵

Affiliation:

1. Commissariat à l’Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.

2. CNRS, UMR 8030, CP5706, Evry, France.

3. Université d’Evry, UMR 8030, CP5706, Evry, France.

4. Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA.

5. Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France.

6. CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.

7. IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.

8. Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy.

9. Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.

10. Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France.

11. Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d’Oé, BP 49716, 37097 Tours Cedex 2, France.

12. ENEA Trisaia Research Center, 75026 Rotondella, Italy.

13. Center for Biotechnology, Universität Bielefeld, Universitätsstraße 27, D-33615 Bielefeld, Germany.

14. AG Genominformatik, Technische Fakultät, Universität Bielefeld, 33594 Bielefeld, Germany.

15. Institut National de la Recherche Agronomique (INRA), Unité de Recherches en Génomique-Info (UR INRA 1164), Centre de Recherche de Versailles, 78026 Versailles Cedex, France.

16. Department of Biology, Chongqing University of Science and Technology, 4000042 Chongqing, China.

17. Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

18. Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028, Spain.

19. Department of Mathematics, University of Maryland, Mathematics Building 084, University of Maryland, College Park, MD 20742, USA.

20. School of Electrical Engineering and Computer Science, University of Ottawa, 800 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.

21. Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy.

22. Indonesian Coffee and Cocoa Institute, Jember, East Java, Indonesia.

23. Laboratório de Genética Molecular, Núcleo de Biotecnologia (NTBio), Embrapa Recursos Genéticos e Biotecnologia, Final Av. W/5 Norte, Parque Estação Biológia, Brasília-DF 70770-917, Brazil.

24. CIRAD, UMR RPB (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.

25. DNA Analytica Srl, Via Licio Giorgieri 5, 34127 Trieste, Italy.

26. Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia 4072, Australia.

27. Central Coffee Research Institute, Coffee Board, Coffee Research Station (Post) - 577 117 Chikmagalur District, Karnataka State, India.

28. Hawaii Agriculture Research Center, Post Office Box 100, Kunia, HI 96759-0100, USA.

29. BIO5 Institute, University of Arizona, 1657 Helen Street, Tucson, AZ 85721, USA.

Abstract

Coffee, tea, and chocolate converge Caffeine has evolved multiple times among plant species, but no one knows whether these events involved similar genes. Denoeud et al. sequenced the Coffea canephora (coffee) genome and identified a conserved gene order (see the Perspective by Zamir). Although this species underwent fewer genome duplications than related species, the relevant caffeine genes experienced tandem duplications that expanded their numbers within this species. Scientists have seen similar but independent expansions in distantly related species of tea and cacao, suggesting that caffeine might have played an adaptive role in coffee evolution. Science , this issue p. 1181 ; see also p. 1124

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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