A petavoxel fragment of human cerebral cortex reconstructed at nanoscale resolution

Author:

Shapson-Coe Alexander12ORCID,Januszewski Michał3ORCID,Berger Daniel R.1ORCID,Pope Art4ORCID,Wu Yuelong1ORCID,Blakely Tim5ORCID,Schalek Richard L.1ORCID,Li Peter H.4ORCID,Wang Shuohong1ORCID,Maitin-Shepard Jeremy4ORCID,Karlupia Neha1,Dorkenwald Sven467ORCID,Sjostedt Evelina1,Leavitt Laramie4ORCID,Lee Dongil18,Troidl Jakob9,Collman Forrest10ORCID,Bailey Luke1,Fitzmaurice Angerica111,Kar Rohin111ORCID,Field Benjamin111ORCID,Wu Hank111ORCID,Wagner-Carena Julian1ORCID,Aley David1ORCID,Lau Joanna1ORCID,Lin Zudi9ORCID,Wei Donglai12ORCID,Pfister Hanspeter9,Peleg Adi113,Jain Viren4ORCID,Lichtman Jeff W.1ORCID

Affiliation:

1. Department of Molecular and Cellular Biology, Center for Brain Science, Harvard University, Cambridge, MA 02138, USA.

2. Queen Mary, University of London, London E1 4NS, UK.

3. Google Research, Zürich 8002, Switzerland.

4. Google Research, Mountain View, CA 94043, USA.

5. Google Research, Seattle, WA 98103, USA.

6. Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08540, USA.

7. Computer Science Department, Princeton University, Princeton, NJ 08540, USA.

8. Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea.

9. School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.

10. Allen Institute for Brain Science, Seattle, WA 98109, USA.

11. Northeastern University, Boston, MA 02115, USA.

12. Computer Science Department, Boston College, Chestnut Hill, MA 02467, USA.

13. Google, Cambridge, MA 02142, USA.

Abstract

To fully understand how the human brain works, knowledge of its structure at high resolution is needed. Presented here is a computationally intensive reconstruction of the ultrastructure of a cubic millimeter of human temporal cortex that was surgically removed to gain access to an underlying epileptic focus. It contains about 57,000 cells, about 230 millimeters of blood vessels, and about 150 million synapses and comprises 1.4 petabytes. Our analysis showed that glia outnumber neurons 2:1, oligodendrocytes were the most common cell, deep layer excitatory neurons could be classified on the basis of dendritic orientation, and among thousands of weak connections to each neuron, there exist rare powerful axonal inputs of up to 50 synapses. Further studies using this resource may bring valuable insights into the mysteries of the human brain.

Publisher

American Association for the Advancement of Science (AAAS)

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