Codiversification of gut microbiota with humans-Reference-Cited by-同舟云学术

Codiversification of gut microbiota with humans

Published:2022-09-16 Issue:6612 Volume:377 Page:1328-1332
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Suzuki Taichi A.¹^ORCID,Fitzstevens J. Liam¹^ORCID,Schmidt Victor T.¹^ORCID,Enav Hagay¹^ORCID,Huus Kelsey E.¹^ORCID,Mbong Ngwese Mirabeau¹^ORCID,Grießhammer Anne²^ORCID,Pfleiderer Anne³^ORCID,Adegbite Bayode R.³⁴^ORCID,Zinsou Jeannot F.³⁴^ORCID,Esen Meral³⁵⁶^ORCID,Velavan Thirumalaisamy P.³⁷^ORCID,Adegnika Ayola A.³⁴⁵⁸^ORCID,Song Le Huu⁷⁹^ORCID,Spector Timothy D.¹⁰^ORCID,Muehlbauer Amanda L.¹¹^ORCID,Marchi Nina¹²^ORCID,Kang Hyena¹³^ORCID,Maier Lisa²⁶^ORCID,Blekhman Ran¹⁴^ORCID,Ségurel Laure¹²¹⁵^ORCID,Ko GwangPyo¹³^ORCID,Youngblut Nicholas D.¹^ORCID,Kremsner Peter³⁴⁵⁶^ORCID,Ley Ruth E.¹⁶^ORCID

Affiliation:

1. Department of Microbiome Science, Max Planck Institute for Biology, Tübingen, Germany.

2. Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen, Tübingen, Germany.

3. Institute for Tropical Medicine, University of Tübingen, Tübingen, Germany.

4. Centre de Recherches Médicales de Lambaréné, Lambaréné, Gabon.

5. German Center for Infection Research, Tübingen, Germany.

6. Cluster of Excellence EXC 2124 Controlling Microbes to Fight Infections, University of Tübingen, Tübingen, Germany.

7. Vietnamese German Center for Medical Research, Hanoi, Vietnam.

8. Fondation pour la Recherche Scientifique, Cotonou, Bénin.

9. 108 Military Central Hospital, Hanoi, Vietnam.

10. Department of Twin Research and Genetic Epidemiology, King’s College London, London, UK.

11. Department of Ecology, Evolution, and Behavior, University of Minnesota, Minneapolis, MN, USA.

12. Eco-anthropologie, Muséum National d’Histoire Naturelle, CNRS, Université de Paris, Paris, France.

13. Department of Environmental Health Sciences, Graduate School of Public Health, Seoul National University, Seoul, Republic of Korea.

14. Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA.

15. Laboratoire de Biométrie et Biologie Evolutive, CNRS, Université Lyon 1, Villeurbanne, France.

Abstract

The gut microbiomes of human populations worldwide have many core microbial species in common. However, within a species, some strains can show remarkable population specificity. The question is whether such specificity arises from a shared evolutionary history (codiversification) between humans and their microbes. To test for codiversification of host and microbiota, we analyzed paired gut metagenomes and human genomes for 1225 individuals in Europe, Asia, and Africa, including mothers and their children. Between and within countries, a parallel evolutionary history was evident for humans and their gut microbes. Moreover, species displaying the strongest codiversification independently evolved traits characteristic of host dependency, including reduced genomes and oxygen and temperature sensitivity. These findings all point to the importance of understanding the potential role of population-specific microbial strains in microbiome-mediated disease phenotypes.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference80 articles.

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4. The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

5. Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

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