Ten millennia of hepatitis B virus evolution-Reference-Cited by-同舟云学术

Ten millennia of hepatitis B virus evolution

Published:2021-10-08 Issue:6564 Volume:374 Page:182-188
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Kocher Arthur¹²³^ORCID,Papac Luka²³^ORCID,Barquera Rodrigo²³^ORCID,Key Felix M.²⁴^ORCID,Spyrou Maria A.²³⁵,Hübler Ron²^ORCID,Rohrlach Adam B.²³⁶^ORCID,Aron Franziska²^ORCID,Stahl Raphaela²^ORCID,Wissgott Antje²,van Bömmel Florian⁷^ORCID,Pfefferkorn Maria⁷,Mittnik Alissa²⁸⁹^ORCID,Villalba-Mouco Vanessa²¹⁰^ORCID,Neumann Gunnar U.²³^ORCID,Rivollat Maïté²¹¹^ORCID,van de Loosdrecht Marieke S.²^ORCID,Majander Kerttu²¹²,Tukhbatova Rezeda I.²¹³^ORCID,Musralina Lyazzat²³¹⁴¹⁵^ORCID,Ghalichi Ayshin²³,Penske Sandra²³^ORCID,Sabin Susanna²^ORCID,Michel Megan²³⁹^ORCID,Gretzinger Joscha²³,Nelson Elizabeth A.²^ORCID,Ferraz Tiago²¹⁶,Nägele Kathrin²³^ORCID,Parker Cody²¹⁷^ORCID,Keller Marcel²¹⁸^ORCID,Guevara Evelyn K.²¹⁹^ORCID,Feldman Michal²⁵^ORCID,Eisenmann Stefanie²³^ORCID,Skourtanioti Eirini²³,Giffin Karen²³^ORCID,Gnecchi-Ruscone Guido Alberto²³^ORCID,Friederich Susanne²⁰^ORCID,Schimmenti Vittoria²¹,Khartanovich Valery²²^ORCID,Karapetian Marina K.²³^ORCID,Chaplygin Mikhail S.²⁴^ORCID,Kufterin Vladimir V.²⁵^ORCID,Khokhlov Aleksandr A.²⁶^ORCID,Chizhevsky Andrey A.²⁷^ORCID,Stashenkov Dmitry A.²⁸^ORCID,Kochkina Anna F.²⁸,Tejedor-Rodríguez Cristina²⁹^ORCID,de Lagrán Íñigo García-Martínez³⁰^ORCID,Arcusa-Magallón Héctor³¹^ORCID,Garrido-Pena Rafael³²^ORCID,Royo-Guillén José Ignacio³³,Nováček Jan³⁴³⁵^ORCID,Rottier Stéphane¹¹^ORCID,Kacki Sacha¹¹³⁶^ORCID,Saintot Sylvie³⁷^ORCID,Kaverzneva Elena³⁸^ORCID,Belinskiy Andrej B.³⁹,Velemínský Petr⁴⁰^ORCID,Limburský Petr⁴¹^ORCID,Kostka Michal⁴²^ORCID,Loe Louise⁴³,Popescu Elizabeth⁴⁴,Clarke Rachel⁴⁴,Lyons Alice⁴⁴,Mortimer Richard⁴⁴^ORCID,Sajantila Antti¹⁹⁴⁵^ORCID,de Armas Yadira Chinique⁴⁶^ORCID,Hernandez Godoy Silvia Teresita⁴⁷⁴⁸^ORCID,Hernández-Zaragoza Diana I.⁴⁹⁵⁰^ORCID,Pearson Jessica⁵¹,Binder Didier⁵²^ORCID,Lefranc Philippe⁵³,Kantorovich Anatoly R.⁵⁴^ORCID,Maslov Vladimir E.⁵⁵^ORCID,Lai Luca⁵⁶⁵⁷,Zoledziewska Magdalena⁵⁸,Beckett Jessica F.⁵⁹^ORCID,Langová Michaela⁴¹^ORCID,Danielisová Alžběta⁴¹^ORCID,Ingman Tara⁶⁰^ORCID,Atiénzar Gabriel García⁶¹^ORCID,de Miguel Ibáñez Maria Paz⁶¹^ORCID,Romero Alejandro⁶¹⁶²^ORCID,Sperduti Alessandra⁶³⁶⁴^ORCID,Beckett Sophie⁶⁵⁶⁶⁶⁷,Salter Susannah J.⁶⁵⁶⁸^ORCID,Zilivinskaya Emma D.²⁵,Vasil’ev Dmitry V.⁶⁹^ORCID,von Heyking Kristin⁷⁰,Burger Richard L.⁷¹^ORCID,Salazar Lucy C.⁷¹,Amkreutz Luc⁷²^ORCID,Navruzbekov Masnav⁷³^ORCID,Rosenstock Eva⁷⁴^ORCID,Alonso-Fernández Carmen⁷⁵^ORCID,Slavchev Vladimir⁷⁶^ORCID,Kalmykov Alexey A.³⁹^ORCID,Atabiev Biaslan Ch.⁷⁷^ORCID,Batieva Elena⁷⁸^ORCID,Calmet Micaela Alvarez⁷⁹^ORCID,Llamas Bastien⁸⁰⁸¹⁸²^ORCID,Schultz Michael⁸³⁸⁴,Krauß Raiko⁸⁵^ORCID,Jiménez-Echevarría Javier⁷⁵^ORCID,Francken Michael⁸⁶^ORCID,Shnaider Svetlana⁸⁷^ORCID,de Knijff Peter⁸⁸^ORCID,Altena Eveline⁸⁸^ORCID,Van de Vijver Katrien⁸⁹⁹⁰⁹¹,Fehren-Schmitz Lars⁹²⁹³^ORCID,Tung Tiffiny A.⁹⁴^ORCID,Lösch Sandra⁹⁵^ORCID,Dobrovolskaya Maria⁵⁵,Makarov Nikolaj⁵⁵,Read Chris⁹⁶,Van Twest Melanie⁶⁵^ORCID,Sagona Claudia⁹⁷^ORCID,Ramsl Peter C.⁹⁸^ORCID,Akar Murat⁹⁹^ORCID,Yener K. Aslihan¹⁰⁰^ORCID,Ballestero Eduardo Carmona¹⁰¹¹⁰²^ORCID,Cucca Francesco⁵⁸¹⁰³^ORCID,Mazzarello Vittorio¹⁰³^ORCID,Utrilla Pilar¹⁰⁴,Rademaker Kurt¹⁰⁵^ORCID,Fernández-Domínguez Eva³⁶^ORCID,Baird Douglas⁵¹^ORCID,Semal Patrick⁸⁹^ORCID,Márquez-Morfín Lourdes¹⁰⁶^ORCID,Roksandic Mirjana⁴⁶¹⁰⁷¹⁰⁸^ORCID,Steiner Hubert¹⁰⁹^ORCID,Salazar-García Domingo Carlos¹¹⁰¹¹¹¹¹²,Shishlina Natalia²²³⁸^ORCID,Erdal Yilmaz Selim¹¹³^ORCID,Hallgren Fredrik¹¹⁴^ORCID,Boyadzhiev Yavor¹¹⁵,Boyadzhiev Kamen¹¹⁵,Küßner Mario³⁴^ORCID,Sayer Duncan¹¹⁶^ORCID,Onkamo Päivi¹¹⁷¹¹⁸^ORCID,Skeates Robin³⁶^ORCID,Rojo-Guerra Manuel²⁹^ORCID,Buzhilova Alexandra²³^ORCID,Khussainova Elmira¹⁵^ORCID,Djansugurova Leyla B.¹⁵^ORCID,Beisenov Arman Z.¹¹⁹^ORCID,Samashev Zainolla¹²⁰¹²¹^ORCID,Massy Ken¹²²^ORCID,Mannino Marcello¹²³¹²⁴^ORCID,Moiseyev Vyacheslav²²^ORCID,Mannermaa Kristiina¹²⁵,Balanovsky Oleg¹²⁶¹²⁷¹²⁸,Deguilloux Marie-France¹¹,Reinhold Sabine¹²⁹^ORCID,Hansen Svend¹²⁹^ORCID,Kitov Egor P.²⁵¹¹⁹^ORCID,Dobeš Miroslav⁴¹^ORCID,Ernée Michal⁴¹^ORCID,Meller Harald²⁰^ORCID,Alt Kurt W.¹³⁰¹³¹¹³²^ORCID,Prüfer Kay²³^ORCID,Warinner Christina²³¹³³^ORCID,Schiffels Stephan²³^ORCID,Stockhammer Philipp W.²³¹²²^ORCID,Bos Kirsten²³^ORCID,Posth Cosimo²⁵^ORCID,Herbig Alexander²³^ORCID,Haak Wolfgang²³¹³⁴^ORCID,Krause Johannes²³^ORCID,Kühnert Denise¹²³¹³⁵^ORCID

Affiliation:

1. Transmission, Infection, Diversification and Evolution Group, Max Planck Institute for the Science of Human History, 07745 Jena, Germany.

2. Department of Archaeogenetics, Max Planck Institute for the Science of Human History, 07745 Jena, Germany.

3. Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.

4. Max Planck Institute for Infection Biology, 10117 Berlin, Germany.

5. Archaeo- and Palaeogenetics group, Institute for Archaeological Sciences, Eberhard Karls University Tübingen, 72070 Tübingen, Germany.

6. ARC Centre of Excellence for Mathematical and Statistical Frontiers, School of Mathematical Sciences, University of Adelaide, Adelaide, SA 5005, Australia.

7. Division of Hepatology, Department of Medicine II, Leipzig University Medical Center, Leipzig, Germany.

8. Department of Genetics, Harvard Medical School, Boston, MA, USA.

9. Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.

10. Institute of Evolutionary Biology, CSIC-Universitat Pompeu Fabra, Barcelona, Spain.

11. Université de Bordeaux, CNRS, PACEA UMR 5199, Pessac, France.

12. Institute of Evolutionary Medicine (IEM), University of Zürich, 8057 Zürich, Switzerland.

13. Laboratory of Structural Biology, Kazan Federal University, Kazan, Russia.

14. Al-Farabi Kazakh National University, Almaty, Kazakhstan.

15. Institute of Genetics and Physiology, 050060 Almaty, Kazakhstan.

16. Departmento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil.

17. Arizona State University School of Human Evolution and Social Change, Tempe Arizona, USA.

18. Estonian Biocentre, Institute of Genomics, University of Tartu, Tartu, Estonia.

19. Department of Forensic Medicine, University of Helsinki, Helsinki, Finland.

20. State Office for Heritage Management and Archaeology Saxony-Anhalt and State Museum of Prehistory, D-06114 Halle, Germany.

21. Museo Archeologico Regionale “Antonino Salinas”, 90133 Palermo, Italy.

22. Peter the Great Museum of Anthropology and Ethnography (Kunstkamera) RAS, 199034 St. Petersburg, Russia.

23. Anuchin Research Institute and Museum of Anthropology, Lomonosov Moscow State University, Moscow, Russia.

24. Sterlitamak Museum of Local History, Sterlitamak, Russia.

25. Institute of Ethnology and Anthropology, Russian Academy of Sciences, Moscow, Russia.

26. Samara State University of Social Sciences and Education, Samara, Russia.

27. Institute of Archaeology named after A. Kh. Khalikov, Tatarstan Academy of Sciences, Kazan, Russia.

28. Samara Museum for Historical and Regional Studies named after P. V. Alabin, Samara, Russia.

29. Department of Prehistory and Archaeology, Faculty of Philosophy and Letters, University of Valladolid, Spain.

30. Department of Prehistory and Archaeology, National Distance Education University (UNED), Madrid, Spain.

31. Private Technical Archaeologist, 50196 La Muela, Spain.

32. Department of Prehistory and Archaeology, Faculty of Philosophy and Letters, Autonomous University of Madrid, Spain.

33. Technical Archaeologist, Government of Aragón, Spain.

34. Thuringian State Office for Heritage Management and Archaeology, 99423 Weimar, Germany.

35. University Medical School Göttingen, Institute of Anatomy and Cell Biology, 37075 Göttingen, Germany.

36. Department of Archaeology, Durham University, South Road, Durham. DH1 3LE. UK.

37. INRAP, ARAR UMR 5138, Maison de l’Orient et de la Méditerranée, Lyon, France.

38. State Historical Museum, Moscow, Russia.

39. Nasledie Cultural Heritage Unit, 355006 Stavropol, Russia.

40. Department of Anthropology, The National Museum, Prague, Czech Republic.

41. Institute of Archaeology of the Czech Academy of Sciences, Prague, Czech Republic.

42. The City of Prague Museum, Prague, Czech Republic.

43. Oxford Archaeology South, Janus House, Osney Mead, Oxford, OX2 0ES, UK.

44. Oxford Archaeology East, Bar Hill, Cambridge, CB23 8SQ, UK.

45. Forensic Medicine Unit, Finnish Institute of Health and Welfare, Helsinki, Finland.

46. Department of Anthropology, University of Winnipeg, Winnipeg, MB, Canada.

47. Grupo de Investigación y Desarrollo, Dirección Provincial de Cultura, Matanzas, Cuba.

48. Universidad de Matanzas, Matanzas, Cuba.

49. Molecular Genetics Laboratory, Escuela Nacional de Antropología e Historia (ENAH), Mexico City, Mexico.

50. Immunogenetics Unit, Técnicas Genéticas Aplicadas a la Clínica (TGAC), Mexico City, Mexico.

51. Department of Archaeology, Classics and Egyptology, University of Liverpool, Liverpool L69 7WZ, UK.

52. Université Côte d’Azur, CNRS, CEPAM UMR 7264, Nice, France.

53. Université de Strasbourg, CNRS, Archimède UMR 7044, Strasbourg, France.

54. Department of Archaeology, Faculty of History, Lomonosov Moscow State University, 119192 Moscow, Russia.

55. Institute of Archaeology, Russian Academy of Sciences, , Moscow 117292, Russia.

56. Department of Anthropology, University of South Florida, Tampa, FL, USA.

57. Department of Anthropology, University of North Carolina at Charlotte, Charlotte, NC, USA.

58. Istituto di Ricerca Genetica e Biomedica–CNR, Monserrato, Italy.

59. Private contractor, Cagliari, Sardinia, Italy.

60. Koç University, Research Center for Anatolian Civilizations, Istanbul 34433, Turkey.

61. Institute for Research in Archaeology and Historical Heritage (INAPH), University of Alicante, 03690, Alicante, Spain.

62. Departamento de Biotecnología, Facultad de Ciencias, Universidad de Alicante, 03690, Alicante, Spain.

63. Bioarchaeology Service, Museum of Civilizations, Rome, Italy.

64. Dipartimento Asia Africa e Mediterraneo, Università di Napoli L’Orientale, Napoli, Italy.

65. Sedgeford Historical and Archaeological Research Project, Old Village Hall, Sedgeford, Hunstanton PE36 5LS, UK.

66. Melbourne Dental School, University of Melbourne, Victoria 3010 Australia.

67. Cranfield Forensic Institute, Cranfield Defence and Security, Cranfield University, College Road, Cranfield, MK43 0AL, UK.

68. Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.

69. Astrakhan State University, Astrakhan, Russia.

70. SNSB, State Collection for Anthropology and Palaeoanatomy, 80333 Munich, Germany.

71. Department of Anthropology, Yale University, New Haven, CT 06511, USA.

72. National Museum of Antiquities, 2301 EC Leiden, Netherlands.

73. Institute of History, Archaeology and Ethnography, Dushanbe, Tajikistan.

74. Freie Universität Berlin, Einstein Center Chronoi, 14195 Berlin, Germany.

75. Cronos S.C. Arqueología y Patrimonio, Burgos, Spain.

76. Regional Historical Museum Varna, Varna, BG-9000, Bulgaria.

77. Institute for Caucasus Archaeology, 361401 Nalchik, Republic Kabardino-Balkaria, Russia.

78. Azov History, Archaeology and Palaeontology Museum-Reserve, Azov 346780, Russia.

79. Museo de Sitio Pucllana, s/n Miraflores, 18 Lima, Peru.

80. Australian Centre for Ancient DNA, School of Biological Sciences and The Environment Institute, Adelaide University, Adelaide, SA 5005, Australia.

81. Centre of Excellence for Australian Biodiversity and Heritage (CABAH), University of Adelaide, Adelaide, SA 5005, Australia.

82. National Centre for Indigenous Genomics, Australian National University, Canberra, ACT 0200, Australia.

83. University Medical School Göttingen, Institute of Anatomy and Embryology, 37075 Göttingen, Germany.

84. Institute of Biology, University of Hildeshein, Germany.

85. Institute for Prehistory, Early History and Medieval Archaeology, University of Tübingen, 72070 Tübingen, Germany.

86. State Office for Cultural Heritage Baden-Württemberg, 78467 Konstanz, Germany.

87. ArchaeoZoology in Siberia and Central Asia–ZooSCAn, CNRS–IAET SB RAS International Research Laboratory, IRL 2013, Novosibirsk, Russia.

88. Department of Human Genetics, Leiden University Medical Center, Leiden, 2333 ZC, Netherlands.

89. Royal Belgian Institute of Natural Sciences, Brussels, Belgium.

90. Center for Archaeological Sciences, University of Leuven, Belgium.

91. Dienst Archeologie–Stad Mechelen, Belgium.

92. UCSC Paleogenomics Laboratory, Department of Anthropology, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.

93. UCSC Genomics Institute, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.

94. Department of Anthropology, Vanderbilt University, Nashville, TN 37235, USA.

95. Department of Physical Anthropology, Institute of Forensic Medicine, University of Bern, Bern, Switzerland.

96. Applied Archaeology School of Science, Institute of Technology Sligo, Ireland.

97. School of Historical and Philosophical Studies, University of Melbourne, Victoria 3010, Australia.

98. Institute of Prehistoric and Historical Archaeology, University of Vienna, Austria.

99. Department of Archaeology, Hatay Mustafa Kemal University, Alahan-Antakya, Hatay 31060, Turkey.

100. Institute for the Study of the Ancient World (ISAW), New York University, New York, NY 10028, USA.

101. Territorial Service of Culture and Tourism from Valladolid, Castilla y León Regional Government, C/ San Lorenzo, 5, 47001, Valladolid, Spain.

102. Department of History, Geography and Comunication, University of Burgos, Paseo de Comendadores, s/n 09001 Burgos (Burgos), Spain.

103. Dipartimento di Scienze Biomediche, Università di Sassari, Sassari, Italy.

104. Área de Prehistoria, P3A DGA Research Group, IPH, University of Zaragoza, C/ Pedro Cerbuna 12, 50009, Zaragoza, Spain.

105. Department of Anthropology, Michigan State University, East Lansing, MI 48824, USA.

106. Osteology Laboratory, Post Graduate Studies Division, Escuela Nacional de Antropología e Historia (ENAH), Mexico City, Mexico.

107. Caribbean Research Institute, Univeristy of Winnipeg, Winnipeg, MB, Canada.

108. DFG Center for Advanced Studies “Words, Bones, Genes, Tools,” University of Tübingen, Tübingen, Germany.

109. South Tyrol Provincial Heritage Service, South Tyrol, Italy.

110. Grupo de Investigación en Prehistoria IT-1223-19 (UPV-EHU)/IKERBASQUE-Basque Foundation for Science, Vitoria, Spain.

111. Departament de Prehistòria, Arqueologia i Història Antiga, Universitat de València, València, Spain.

112. Department of Geological Sciences, University of Cape Town, Cape Town, South Africa.

113. Human_G Laboratory, Department of Anthropology, Hacettepe University, Ankara 06800, Turkey.

114. The Cultural Heritage Foundation, 722 12 Västerås, Sweden.

115. National Archaeological Institute with Museum at the Bulgarian Academy of Sciences, Sofia 1000, Bulgaria.

116. School of Natural Sciences, University of Central Lancashire, Preston, UK.

117. Department of Biosciences, University of Helsinki, 00014 Helsinki, Finland.

118. Department of Biology, University of Turku, 20500 Turku, Finland.

119. Institute of archaeology named after A. Kh. Margulan, 44 Almaty, Kazakhstan.

120. Branch of Institute of Archaeology named after A.Kh. Margulan, 24 of 511 Nur-Sultan, Kazakhstan.

121. State Historical and Cultural Museum-Reserve “Berel,” Katon-Karagay district, East Kazakhstan region, Kazakhstan.

122. Institut für Vor- und Frühgeschichtliche Archäologie und Provinzialrömische Archäologie, Ludwig-Maximilians-Universität München, 80539 Munich, Germany.

123. Department of Archeology and Heritage Studies, Aarhus University, 8270 Højbjerg, Denmark.

124. Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig Germany.

125. Department of Cultures, University of Helsinki, 00014 Helsinki, Finland.

126. Research Centre for Medical Genetics, Moscow, Russia.

127. Biobank of North Eurasia, Moscow, Russia.

128. Vavilov Institute of General Genetics, Moscow, Russia.

129. Eurasia Department, German Archaeological Institute, Berlin, Germany.

130. Danube Private University, Center of Natural and Cultural Human History, A - 3500 Krems-Stein, Austria.

131. Integrative Prehistory and Archaeological Science, Spalenring 145, CH-4055 Basel, Switzerland.

132. Department of Biomedical Engineering (DBE), Universitätsspital Basel (HFZ), CH-4123 Allschwil, Switzerland.

133. Department of Anthropology, Harvard University, Cambridge, MA 02138, USA.

134. School of Biological Sciences, University of Adelaide, Adelaide, SA, 5005, Australia.

135. European Virus Bioinformatics Center (EVBC), Jena, Germany.

Abstract

Ancient DNA traces the history of hepatitis B Hepatitis B virus (HBV) infections represent a worldwide human health concern. To study the history of this pathogen, Kocher et al . identified 137 human remains with detectable levels of virus dating between 400 and 10,000 years ago. Sequencing and analyses of these ancient viruses suggested a common ancestor between 12,000 and 20,000 years ago. There is no evidence indicating that HBV was present in the earliest humans as they spread out of Africa; however, HBV was likely present in human populations before farming. Furthermore, the virus was present in the Americas by about 9000 years ago, representing a lineage sister to the viral strains found in Eurasia that diverged about 20,000 years ago. —LMZ

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference253 articles.

1. World Health Organization (WHO) Global Hepatitis Report (WHO 2017).

2. D. Lavanchy M. Kane in Hepatitis B Virus in Human Diseases Y.-F. Liaw F. Zoulim Eds. (Springer International Publishing Cham 2016) Molecular and Translational Medicine pp. 187–203.

3. Genotypes and Genetic Variability of Hepatitis B Virus

4. The Global Hepatitis B Virus Genotype Distribution Approximated from Available Genotyping Data

5. Origins and Evolution of Hepatitis B Virus and Hepatitis D Virus

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