Genome structures resolve the early diversification of teleost fishes-Reference-Cited by-同舟云学术

Genome structures resolve the early diversification of teleost fishes

Published:2023-02-10 Issue:6632 Volume:379 Page:572-575
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Parey Elise¹²^ORCID,Louis Alexandra¹^ORCID,Montfort Jerome²^ORCID,Bouchez Olivier³^ORCID,Roques Céline³^ORCID,Iampietro Carole³^ORCID,Lluch Jerome³,Castinel Adrien³^ORCID,Donnadieu Cécile³^ORCID,Desvignes Thomas⁴^ORCID,Floi Bucao Christabel⁵⁶^ORCID,Jouanno Elodie²,Wen Ming²⁷^ORCID,Mejri Sahar⁸^ORCID,Dirks Ron⁹^ORCID,Jansen Hans⁹^ORCID,Henkel Christiaan¹⁰¹¹^ORCID,Chen Wei-Jen¹²^ORCID,Zahm Margot¹³^ORCID,Cabau Cédric¹³^ORCID,Klopp Christophe¹³¹⁴^ORCID,Thompson Andrew W.¹⁵¹⁶¹⁷^ORCID,Robinson-Rechavi Marc⁵^ORCID,Braasch Ingo¹⁶¹⁷^ORCID,Lecointre Guillaume¹⁸^ORCID,Bobe Julien²^ORCID,Postlethwait John H.⁴^ORCID,Berthelot Camille¹¹⁹^ORCID,Roest Crollius Hugues¹^ORCID,Guiguen Yann²^ORCID

Affiliation:

1. Institut de Biologie de l’ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.

2. INRAE, LPGP, Rennes, France.

3. GeT-PlaGe, INRAE, Genotoul, Castanet-Tolosan, France.

4. Institute of Neuroscience, University of Oregon, Eugene, OR, USA.

5. Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.

6. SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.

7. State Key Laboratory of Developmental Biology of Freshwater Fish, College of Life Science, Hunan Normal University, Changsha, China.

8. Florida Atlantic University, Harbor Branch Oceanographic Institute, Fort Pierce, FL, USA.

9. Future Genomics Technologies, Leiden, Netherlands.

10. Institute of Biology, University of Leiden, Leiden, Netherlands.

11. Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway.

12. Institute of Oceanography, National Taiwan University, Taipei 10617, Taiwan.

13. Sigenae, GenPhySE, INRAE, ENVT, Université de Toulouse, Castanet Tolosan, France.

14. Sigenae, Genotoul Bioinfo, MIAT UR875, INRAE, Castanet Tolosan, France.

15. Department of Biological Sciences, Western Michigan University, Kalamazoo, MI, USA.

16. Department of Integrative Biology, Michigan State University, East Lansing, MI, USA.

17. Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, MI, USA.

18. Institut Systématique, Evolution, Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, SU, EPHE, UA, Paris, France.

19. Institut Pasteur, Université Paris Cité, CNRS UMR 3525, INSERM UA12, Comparative Functional Genomics group, F-75015 Paris, France.

Abstract

Accurate species phylogenies are a prerequisite for all evolutionary research. Teleosts are the largest and most diversified group of extant vertebrates, but relationships among their three oldest extant lineages remain unresolved. On the basis of seven high-quality new genome assemblies in Elopomorpha (tarpons, eels), we revisited the topology of the deepest branches of the teleost phylogeny using independent gene sequence and chromosomal rearrangement phylogenomic approaches. These analyses converged to a single scenario that unambiguously places the Elopomorpha and Osteoglossomorpha (arapaima, elephantnose fish) in a monophyletic sister group to all other teleosts, i.e., the Clupeocephala lineage (zebrafish, medaka). This finding resolves more than 50 years of controversy on the evolutionary relationships of these lineages and highlights the power of combining different levels of genome-wide information to solve complex phylogenies.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Link

https://www.science.org/doi/pdf/10.1126/science.abq4257

Reference76 articles.

1. Phylogenomics and the reconstruction of the tree of life

2. J. S. Nelson T. C. Grande M. V. H. Wilson Fishes of the World (Wiley 2016).

3. The Emerging Phylogenetic Perspective on the Evolution of Actinopterygian Fishes

4. Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data

5. Phylogenetic classification of bony fishes

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