Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome-Reference-Cited by-同舟云学术

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Published:2022-04-08 Issue:6589 Volume:376 Page:156-162
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Zayed Ahmed A.¹²³^ORCID,Wainaina James M.¹³^ORCID,Dominguez-Huerta Guillermo¹²³^ORCID,Pelletier Eric⁴⁵^ORCID,Guo Jiarong¹²³^ORCID,Mohssen Mohamed¹³⁶^ORCID,Tian Funing¹³^ORCID,Pratama Akbar Adjie¹²^ORCID,Bolduc Benjamin¹²³^ORCID,Zablocki Olivier¹²³,Cronin Dylan¹²³^ORCID,Solden Lindsey¹,Delage Erwan⁵⁷^ORCID,Alberti Adriana⁴⁵^ORCID,Aury Jean-Marc⁴⁵^ORCID,Carradec Quentin⁴⁵^ORCID,da Silva Corinne⁴⁵^ORCID,Labadie Karine⁴⁵^ORCID,Poulain Julie⁴⁵^ORCID,Ruscheweyh Hans-Joachim⁸^ORCID,Salazar Guillem⁸,Shatoff Elan⁹^ORCID,Bundschuh Ralf⁶⁹¹⁰¹¹^ORCID,Fredrick Kurt¹^ORCID,Kubatko Laura S.¹²¹³,Chaffron Samuel⁵⁷^ORCID,Culley Alexander I.¹⁴^ORCID,Sunagawa Shinichi⁸^ORCID,Kuhn Jens H.¹⁵^ORCID,Wincker Patrick⁴⁵,Sullivan Matthew B.¹²³⁶¹²^ORCID,Acinas Silvia G.,Babin Marcel,Bork Peer,Boss Emmanuel,Bowler Chris,Cochrane Guy,de Vargas Colomban,Gorsky Gabriel,Guidi Lionel,Grimsley Nigel,Hingamp Pascal,Iudicone Daniele,Jaillon Olivier,Kandels Stefanie,Karp-Boss Lee,Karsenti Eric,Not Fabrice,Ogata Hiroyuki,Poulton Nicole,Pesant Stéphane,Sardet Christian,Speich Sabrinia,Stemmann Lars,Sullivan Matthew B.,Sungawa Shinichi,Wincker Patrick,

Affiliation:

1. Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.

2. EMERGE Biology Integration Institute, Ohio State University, Columbus, OH 43210, USA.

3. Center of Microbiome Science, Ohio State University, Columbus, OH 43210, USA.

4. Génomique Métabolique, Genoscope, Institut François-Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91000 Evry, France.

5. Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 75016 Paris, France.

6. The Interdisciplinary Biophysics Graduate Program, Ohio State University, Columbus, OH 43210, USA.

7. Nantes Université, CNRS UMR 6004, LS2N, F-44000 Nantes, France.

8. Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich, Zurich, Switzerland.

9. Department of Physics, Ohio State University, Columbus, OH 43210, USA.

10. Department of Chemistry and Biochemistry, Ohio State University, Columbus, OH 43210, USA.

11. Division of Hematology, Department of Internal Medicine, Ohio State University, Columbus, OH 43210, USA.

12. Department of Evolution, Ecology, and Organismal Biology, Ohio State University, Columbus, OH 43210, USA.

13. Department of Statistics, Ohio State University, Columbus, OH 43210, USA.

14. Département de Biochimie, Microbiologie et Bio-informatique, Université Laval, Québec, Québec G1V 0A6, Canada.

15. Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA.

Abstract

Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem players, RNA viruses are insufficiently studied outside disease settings. In this study, we analyzed ≈28 terabases of Global Ocean RNA sequences to expand Earth’s RNA virus catalogs and their taxonomy, investigate their evolutionary origins, and assess their marine biogeography from pole to pole. Using new approaches to optimize discovery and classification, we identified RNA viruses that necessitate substantive revisions of taxonomy (doubling phyla and adding >50% new classes) and evolutionary understanding. “Species”-rank abundance determination revealed that viruses of the new phyla “ Taraviricota ,” a missing link in early RNA virus evolution, and “ Arctiviricota ” are widespread and dominant in the oceans. These efforts provide foundational knowledge critical to integrating RNA viruses into ecological and epidemiological models.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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