The Ecoresponsive Genome of Daphnia pulex

Author:

Colbourne John K.1,Pfrender Michael E.2,Gilbert Donald13,Thomas W. Kelley4,Tucker Abraham34,Oakley Todd H.5,Tokishita Shinichi6,Aerts Andrea7,Arnold Georg J.8,Basu Malay Kumar9,Bauer Darren J.4,Cáceres Carla E.10,Carmel Liran9,Casola Claudio3,Choi Jeong-Hyeon1,Detter John C.7,Dong Qunfeng1,Dusheyko Serge7,Eads Brian D.13,Fröhlich Thomas8,Geiler-Samerotte Kerry A.5,Gerlach Daniel11,Hatcher Phil4,Jogdeo Sanjuro4,Krijgsveld Jeroen12,Kriventseva Evgenia V.11,Kültz Dietmar13,Laforsch Christian14,Lindquist Erika7,Lopez Jacqueline1,Manak J. Robert15,Muller Jean16,Pangilinan Jasmyn7,Patwardhan Rupali P.1,Pitluck Samuel7,Pritham Ellen J.17,Rechtsteiner Andreas1,Rho Mina18,Rogozin Igor B.9,Sakarya Onur5,Salamov Asaf7,Schaack Sarah317,Shapiro Harris7,Shiga Yasuhiro6,Skalitzky Courtney15,Smith Zachary1,Souvorov Alexander9,Sung Way4,Tang Zuojian1,Tsuchiya Dai1,Tu Hank7,Vos Harmjan12,Wang Mei7,Wolf Yuri I.9,Yamagata Hideo6,Yamada Takuji16,Ye Yuzhen18,Shaw Joseph R.119,Andrews Justen13,Crease Teresa J.20,Tang Haixu118,Lucas Susan M.7,Robertson Hugh M.21,Bork Peer16,Koonin Eugene V.9,Zdobnov Evgeny M.1122,Grigoriev Igor V.7,Lynch Michael3,Boore Jeffrey L.72324

Affiliation:

1. Center for Genomics and Bioinformatics, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA.

2. Department of Biology, Utah State University, 5305 Old Main Hill Road, Logan, UT 84322–5205, USA.

3. Department of Biology, Indiana University, 1001 East Third Street, Bloomington, IN 47405, USA.

4. Hubbard Center for Genome Studies, University of New Hampshire, 35 Colovos Road, Durham, NH 03824, USA.

5. Department of Ecology, Evolution, and Marine Biology, University of California–Santa Barbara, Santa Barbara, CA 93106, USA.

6. Laboratory of Environmental and Molecular Biology, Environmental Sciences Division, School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, 1432-1 Horinouchi, Hachiouji, Tokyo, 192-0392, Japan.

7. Department of Energy Joint Genome Institute (JGI), 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

8. Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, Ludwig-Maximilians-Universität München, Germany.

9. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA.

10. School of Integrative Biology, University of Illinois, 515 Morril Hall, Urbana, IL 61801, USA.

11. University of Geneva Medical School and Swiss Institute of Bioinformatics, 1 rue Michel-Servet, 1211 Geneva, Switzerland.

12. Biomolecular Mass Spectrometry and Proteomics Group, Bijvoet Centre for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, and Netherlands Proteomics Center, Utrecht University, Sorbonnelaan 16, 3584 CA, Utrecht, Netherlands.

13. Department of Animal Science, University of California, Davis, Meyer Hall, One Shields Avenue, Davis, CA 95616, USA.

14. Department of Biology II and GeoBio Center Munich, Ludwig-Maximilians-University Munich, Großhadernerstrasse 2, 82152 Planegg-Martinsried, Germany.

15. Gene Expression, Roche NimbleGen Inc., 504 South Rosa Rd, Madison WI 53719, USA.

16. Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL) Heidelberg, Meyerhofstrasse 1, D-69117 Heidelberg, Germany.

17. Department of Biology, University of Texas, Arlington, Box 19498, Arlington, TX 76019, USA.

18. School of Informatics and Computing, Indiana University, Informatics Building, 901 East Tenth Street, Bloomington, IN 47408–3912, USA.

19. School of Public and Environmental Affairs, Indiana University, 1315 East Tenth Street, Bloomington, IN 47405, USA.

20. Department of Integrative Biology, University of Guelph, Guelph, Ontario N1G 2W1 Canada.

21. Department of Entomology, University of Illinois at Urbana-Champaign, 505 South Goodwin Avenue, Urbana, IL 61801, USA.

22. Imperial College London, South Kensington Campus, SW7 2AZ London, UK.

23. Genome Project Solutions, 1024 Promenade Street, Hercules, CA 94547, USA.

24. Department of Integrative Biology, University of California, Berkeley, CA 94720, USA.

Abstract

The Daphnia genome reveals a multitude of genes and shows adaptation through gene family expansions.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference25 articles.

1. Regulation of Lake Primary Productivity by Food Web Structure

2. J. R. Shaw et al . in Advances in Experimental Biology on Toxicogenomics C. Hogstrand P. Kille Eds. (Elsevier Press 2008) pp. 165–219.

3. Assays with Daphnia magna and Danio rerio as alert systems in aquatic toxicology

4. P. D. N. Hebert in Daphnia R. H. Peters R. de Bernardi Eds. (Memorie dell'Istituto Italiano di Idrobiologia 1987) vol. 45 pp. 439–460.

5. R. Tollrian S. I. Dodson in The Ecology and Evolution of Inducible Defenses R. Tollrian C. D. Harvell Eds. (Princeton Univ. Press Princeton NJ 1999) pp. 177–202.

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