The transcriptional landscape of polyploid wheat
Author:
Ramírez-González R. H.1ORCID, Borrill P.1ORCID, Lang D.2ORCID, Harrington S. A.1ORCID, Brinton J.1ORCID, Venturini L.3, Davey M.4ORCID, Jacobs J.4ORCID, van Ex F.4ORCID, Pasha A.5ORCID, Khedikar Y.6ORCID, Robinson S. J.6ORCID, Cory A. T.7, Florio T.1ORCID, Concia L.8ORCID, Juery C.9ORCID, Schoonbeek H.1ORCID, Steuernagel B.1ORCID, Xiang D.10, Ridout C. J.1ORCID, Chalhoub B.11, Mayer K. F. X.212ORCID, Benhamed M.8, Latrasse D.8, Bendahmane A.8, Wulff B. B. H.1ORCID, Appels R.13, Tiwari V.14, Datla R.10, Choulet F.9ORCID, Pozniak C. J.7ORCID, Provart N. J.5ORCID, Sharpe A. G.15ORCID, Paux E.9ORCID, Spannagl M.2ORCID, Bräutigam A.16, Uauy C.1ORCID, Korol Abraham, Sharpe Andrew G., Juhász Angéla, Rohde Antje, Bellec Arnaud, Distelfeld Assaf, Akpinar Bala Ani, Keller Beat, Darrier Benoit, Gill Bikram, Chalhoub Boulos, Steuernagel Burkhard, Feuillet Catherine, Chaudhary Chanderkant, Uauy Cristobal, Pozniak Curtis, Ormanbekova Danara, Xiang Daoquan, Latrasse David, Swarbreck David, Barabaschi Delfina, Raats Dina, Sergeeva Ekaterina, Salina Elena, Paux Etienne, Cattonaro Federica, Choulet Frédéric, Kobayashi Fuminori, Keeble-Gagnere Gabriel, Kaur Gaganpreet, Muehlbauer Gary, Kettleborough George, Yu Guotai, Šimková Hana, Gundlach Heidrun, Berges Hélène, Rimbert Hélène, Budak Hikmet, Handa Hirokazu, Small Ian, Bartoš Jan, Rogers Jane, Doležel Jaroslav, Keilwagen Jens, Poland Jesse, Melonek Joanna, Jacobs John, Wright Jon, Jones Jonathan D. G., Gutierrez-Gonzalez Juan, Eversole Kellye, Nilsen Kirby, Mayer Klaus F.X., Kanyuka Kostya, Singh Kuldeep, Gao Liangliang, Concia Lorenzo, Venturini Luca, Cattivelli Luigi, Spannagl Manuel, Mascher Martin, Hayden Matthew, Abrouk Michael, Alaux Michael, Luo Mingcheng, Valárik Miroslav, Benhamed Moussa, Singh Nagendra K., Sharma Naveen, Guilhot Nicolas, Ravin Nikolai, Stein Nils, Olsen Odd-Arne, Gupta Om Prakash, Khurana Paramjit, Chhuneja Parveen, Bayer Philipp E., Borrill Philippa, Leroy Philippe, Rigault Philippe, Sourdille Pierre, Hernandez Pilar, Flores Raphael, Ramirez-Gonzalez Ricardo H., King Robert, Knox Ron, Appels Rudi, Zhou Ruonan, Walkowiak Sean, Galvez Sergio, Biyiklioglu Sezgi, Nasuda Shuhei, Sandve Simen, Chalabi Smahane, Weining Song, Sehgal Sunish, Jindal Suruchi, Belova Tatiana, Letellier Thomas, Wicker Thomas, Tanaka Tsuyoshi, Fahima Tzion, Barbe Valérie, Tiwari Vijay, Kumar Vinod, Tan Yifang,
Affiliation:
1. John Innes Centre, Norwich Research Park, NR4 7UH Norwich, UK. 2. Plant Genome and Systems Biology, Helmholtz Center Munich, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany. 3. Earlham Institute, Norwich Research Park, NR4 7UZ Norwich, UK. 4. Bayer Crop Science, Innovation Center, Technologiepark 38, 9052 Zwijnaarde, Belgium. 5. Department of Cell and Systems Biology, Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks Street, Toronto, ON M5S 3B2, Canada. 6. Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2, Canada. 7. Crop Development Centre, University of Saskatchewan, Agriculture Building, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada. 8. Institut of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, CNRS, INRA, Université Paris-Sud, Université d’Evry, Université Paris-Diderot, Sorbonne Paris-Cité, Bâtiment 630, 91405 Orsay, France. 9. GDEC, INRA, UCA, 5 Chemin de Beaulieu, Clermont-Ferrand 63039, France. 10. Aquatic and Crop Resource Development, National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada. 11. INRA, 2 rue Gaston Crémieux, Evry 9057, France. 12. School of Life Sciences Weihenstephan, Technical University Munich, Munich, Germany. 13. School of BioSciences, University of Melbourne, AgriBio, La Trobe University, and School of Veterinary and Life Sciences, Murdoch University, 90 South Street, Perth, WA 6150, Australia. 14. Plant Sciences and Landscape Architecture, University of Maryland, 4291 Field House Drive, College Park, MD 20742, USA. 15. Global Institute for Food Security, University of Saskatchewan, 110 Gymnasium Place, Saskatoon, SK S7N 4J8, Canada. 16. Molecular Genetics, IPK Gatersleben, Corrensstrasse 3, 06466 Gatersleben, Germany.
Abstract
Insights from the annotated wheat genome
Wheat is one of the major sources of food for much of the world. However, because bread wheat's genome is a large hybrid mix of three separate subgenomes, it has been difficult to produce a high-quality reference sequence. Using recent advances in sequencing, the International Wheat Genome Sequencing Consortium presents an annotated reference genome with a detailed analysis of gene content among subgenomes and the structural organization for all the chromosomes. Examples of quantitative trait mapping and CRISPR-based genome modification show the potential for using this genome in agricultural research and breeding. Ramírez-González
et al.
exploited the fruits of this endeavor to identify tissue-specific biased gene expression and coexpression networks during development and exposure to stress. These resources will accelerate our understanding of the genetic basis of bread wheat.
Science
, this issue p.
eaar7191
; see also p.
eaar6089
Publisher
American Association for the Advancement of Science (AAAS)
Subject
Multidisciplinary
Cited by
660 articles.
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