Determinants of community structure in the global plankton interactome-Reference-Cited by-同舟云学术

Determinants of community structure in the global plankton interactome

Published:2015-05-22 Issue:6237 Volume:348 Page:
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Lima-Mendez Gipsi¹²³,Faust Karoline¹²³,Henry Nicolas⁴⁵,Decelle Johan⁴⁵,Colin Sébastien⁴⁵⁶,Carcillo Fabrizio¹²³⁷,Chaffron Samuel¹²³,Ignacio-Espinosa J. Cesar⁸,Roux Simon⁸,Vincent Flora²⁶,Bittner Lucie⁴⁵⁶⁹,Darzi Youssef²³,Wang Jun¹²,Audic Stéphane⁴⁵,Berline Léo¹⁰¹¹,Bontempi Gianluca⁷,Cabello Ana M.¹²,Coppola Laurent¹⁰¹¹,Cornejo-Castillo Francisco M.¹²,d'Ovidio Francesco¹³,De Meester Luc¹⁴,Ferrera Isabel¹²,Garet-Delmas Marie-José⁴⁵,Guidi Lionel¹⁰¹¹,Lara Elena¹²,Pesant Stéphane¹⁵¹⁶,Royo-Llonch Marta¹²,Salazar Guillem¹²,Sánchez Pablo¹²,Sebastian Marta¹²,Souffreau Caroline¹⁴,Dimier Céline⁴⁵⁶,Picheral Marc¹⁰¹¹,Searson Sarah¹⁰¹¹,Kandels-Lewis Stefanie¹⁷¹⁸,Gorsky Gabriel¹⁰¹¹,Not Fabrice⁴⁵,Ogata Hiroyuki¹⁹,Speich Sabrina²⁰²¹,Stemmann Lars¹⁰¹¹,Weissenbach Jean²²²³²⁴,Wincker Patrick²²²³²⁴,Acinas Silvia G.¹²,Sunagawa Shinichi¹⁷,Bork Peer¹⁷²⁵,Sullivan Matthew B.⁸,Karsenti Eric⁶¹⁸,Bowler Chris⁶,de Vargas Colomban⁴⁵,Raes Jeroen¹²³,

Affiliation:

1. Department of Microbiology and Immunology, Rega Institute KU Leuven, Herestraat 49, 3000 Leuven, Belgium.

2. VIB Center for the Biology of Disease, VIB, Herestraat 49, 3000 Leuven, Belgium.

3. Department of Applied Biological Sciences (DBIT) Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium.

4. Station Biologique de Roscoff, CNRS, UMR 7144, Place Georges Teissier, 29680 Roscoff, France.

5. Sorbonne Universités, Université Pierre et Marie Curie (UPMC) Université Paris 06, UMR 7144, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France.

6. Ecole Normale Supérieure, Institut de Biologie de l’ENS (IBENS), Inserm U1024, CNRS UMR 8197, Paris, F-75005 France.

7. Interuniversity Institute of Bioinformatics in Brussels (IB)2, ULB Machine Learning Group, Computer Science Department, Université Libre de Bruxelles (ULB), Brussels, Belgium.

8. Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721, USA.

9. Institut de Biologie Paris-Seine, CNRS FR3631, F-75005, Paris, France.

10. CNRS, UMR 7093, Laboratoire d’Océanographie de Villefranche (LOV), Observatoire Océanologique, F-06230 Villefranche-sur-mer, France.

11. Sorbonne Universités, UPMC Paris 06, UMR 7093, Laboratoire d’Océanographie de Villefranche (LOV), Observatoire Océanologique, F-06230 Villefranche-sur-mer, France.

12. Department of Marine Biology and Oceanography, Institute of Marine Sciences (ICM)–Consejo Superior de Investigaciones Científicas (CSIC), Pg. Marítim de la Barceloneta, 37-49, Barcelona E08003, Spain.

13. Sorbonne Universités, UPMC, Université Paris 06, CNRS–Institut pour la Recherche et le Développement–Muséum National d'Histoire Naturelle, Laboratoire d’Océanographie et du Climat: Expérimentations et Approches Numériques (LOCEAN) Laboratory, 4 Place Jussieu, 75005, Paris, France.

14. KU Leuven, Laboratory of Aquatic Ecology, Evolution and Conservation, Charles Deberiotstraat 32, 3000 Leuven.

15. PANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen, Hochschulring 18, 28359 Bremen, Germany.

16. MARUM, Center for Marine Environmental Sciences, University of Bremen, Hochschulring 18, 28359 Bremen, Germany.

17. Structural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

18. Directors’ Research, European Molecular Biology Laboratory, Heidelberg, Germany.

19. Institute for Chemical Research, Kyoto University, Gokasho, Uji, 611-0011 Kyoto, Japan.

20. Department of Geosciences, Laboratoire de Météorologie Dynamique (LMD), Ecole Normale Supérieure, 24 rue Lhomond, 75231 Paris Cedex 05, France.

21. Laboratoire de Physique des Océan, Université de Bretagne Occidentale (UBO)–Institut Universaire Européen de la Mer (IUEM), Palce Copernic, 29820 Polouzané, France.

22. Commissariat à l’Énergie Atomique (CEA), Genoscope, 2 rue Gaston Crémieux, 91000 Evry, France.

23. CNRS, UMR 8030, 2 rue Gaston Crémieux, 91000 Evry, France.

24. Université d’Evry, UMR 8030, CP5706 Evry, France.

25. Max-Delbrück-Centre for Molecular Medicine, 13092 Berlin, Germany.

Abstract

Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the Tara Oceans project, we studied the photic zone interactome using environmental factors and organismal abundance profiles and found that environmental factors are incomplete predictors of community structure. We found associations across plankton functional types and phylogenetic groups to be nonrandomly distributed on the network and driven by both local and global patterns. We identified interactions among grazers, primary producers, viruses, and (mainly parasitic) symbionts and validated network-generated hypotheses using microscopy to confirm symbiotic relationships. We have thus provided a resource to support further research on ocean food webs and integrating biological components into ocean models.

Funder

Gordon and Betty Moore Foundation

ANR

KU Leuven

VIB

Centre National de la Recherche Scientifique

Spanish Ministry of Science and Innovation

European Molecular Biology Laboratory

Genoscope/CEA

Stazione Zoologica Anton Dohrn

UNIMIB

Fund for Scientific Research - Flanders