The Genome of the Western Clawed Frog Xenopus tropicalis-Reference-Cited by-同舟云学术

The Genome of the Western Clawed Frog Xenopus tropicalis

Published:2010-04-30 Issue:5978 Volume:328 Page:633-636
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Hellsten Uffe¹,Harland Richard M.²,Gilchrist Michael J.³,Hendrix David²,Jurka Jerzy⁴,Kapitonov Vladimir⁴,Ovcharenko Ivan⁵,Putnam Nicholas H.⁶,Shu Shengqiang¹,Taher Leila⁵,Blitz Ira L.⁷,Blumberg Bruce⁷,Dichmann Darwin S.²,Dubchak Inna¹,Amaya Enrique⁸,Detter John C.⁹,Fletcher Russell²,Gerhard Daniela S.¹⁰,Goodstein David¹,Graves Tina¹¹,Grigoriev Igor V.¹,Grimwood Jane¹¹²,Kawashima Takeshi²¹³,Lindquist Erika¹,Lucas Susan M.¹,Mead Paul E.¹⁴,Mitros Therese²,Ogino Hajime¹⁵,Ohta Yuko¹⁶,Poliakov Alexander V.¹,Pollet Nicolas¹⁷,Robert Jacques¹⁸,Salamov Asaf¹,Sater Amy K.¹⁹,Schmutz Jeremy¹¹²,Terry Astrid¹,Vize Peter D.²⁰,Warren Wesley C.¹¹,Wells Dan¹⁹,Wills Andrea²,Wilson Richard K.¹¹,Zimmerman Lyle B.²¹,Zorn Aaron M.²²,Grainger Robert²³,Grammer Timothy²,Khokha Mustafa K.²⁴,Richardson Paul M.¹,Rokhsar Daniel S.¹²

Affiliation:

1. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA.

2. Center for Integrative Genomics, University of California Berkeley, Berkeley, CA 94720, USA.

3. Division of Systems Biology, MRC National Institute for Medical Research, The Ridgeway, London NW7 1AA, UK.

4. Genetic Information Research Institute, Mountain View, CA 94043, USA.

5. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

6. Department of Ecology and Evolutionary Biology, Rice University, Houston, TX 77005, USA.

7. Department of Developmental and Cell Biology, 4410 Natural Sciences Building 2, University of California Irvine, Irvine, CA 92697–2300, USA.

8. The Healing Foundation Centre, University of Manchester, Oxford Road, Manchester M13 9PT, UK.

9. DOE Joint Genome Institute, Los Alamos, National Laboratory, Los Alamos NM 87545, USA.

10. Office of Cancer Genomics, National Cancer Institute, NIH, DHHS Bethesda, MD 20892, USA.

11. Genome Sequencing Center, Washington University School of Medicine, St. Louis, MO 63108, USA.

12. Joint Genome Institute HudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL 35806, USA.

13. Okinawa Institute of Science and Technology, 12-22, Suzaki, Uruma, Okinawa 904-2234, Japan.

14. Department of Pathology, St. Jude Children’s Research Hospital, 262 Danny Thomas Place, D4047C, Mailstop 342, Memphis, TN 38105, USA.

15. Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, Japan.

16. Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

17. Programme d’Epigénomique, CNRS, Genopole, Université d’Evry Val d’Essonne, F-91058 Evry, France.

18. Department of Microbiology and Immunology, Box 672, University of Rochester, Medical Center, Rochester, NY 14642, USA.

19. Department of Biology and Biochemistry, University of Houston, Houston, TX 77204–5001, USA.

20. Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta T2N 1N4, Canada.

21. MRC National Institute for Medical Research, London NW7 1AA, UK.

22. Division of Developmental Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA.

23. Department of Biology, Gilmer Hall, Post Office Box 400328, Charlottesville, VA 22904–4328, USA.

24. Department of Pediatrics and Genetics, Yale University School of Medicine, Post Office Box 208064, New Haven, CT 06520–8064, USA.

Abstract

Frog Genome The African clawed frog Xenopus tropicalis is the first amphibian to have its genome sequenced. Hellsten et al. (p. 633 , see the cover) present an analysis of a draft assembly of the genome. The genome of the frog, which is an important model system for developmental biology, encodes over 20,000 protein-coding genes, of which more than 1700 genes have identified human disease associations. Detailed comparison of the content of protein-coding genes with other tetrapods—human and chicken—reveals extensive shared synteny, occasionally spanning entire chromosomes.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference23 articles.

1. Studies on the Pituitary

2. A Tribute to the Xenopus laevis Oocyte and Egg

3. Karyotype analysis of Xenopus tropicalis Gray, Pipidae

4. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

5. Initial sequencing and analysis of the human genome

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