Genetic basis of ruminant headgear and rapid antler regeneration

Author:

Wang Yu1ORCID,Zhang Chenzhou2ORCID,Wang Nini1ORCID,Li Zhipeng3ORCID,Heller Rasmus4ORCID,Liu Rong56ORCID,Zhao Yue1ORCID,Han Jiangang7ORCID,Pan Xiangyu1ORCID,Zheng Zhuqing1ORCID,Dai Xueqin56ORCID,Chen Ceshi56,Dou Mingle1ORCID,Peng Shujun1ORCID,Chen Xianqing2ORCID,Liu Jing1ORCID,Li Ming1ORCID,Wang Kun2ORCID,Liu Chang2ORCID,Lin Zeshan2ORCID,Chen Lei2ORCID,Hao Fei8ORCID,Zhu Wenbo2ORCID,Song Chengchuang1,Zhao Chen1ORCID,Zheng Chengli9ORCID,Wang Jianming9,Hu Shengwei10ORCID,Li Cunyuan10ORCID,Yang Hui8ORCID,Jiang Lin7,Li Guangyu3,Liu Mingjun11,Sonstegard Tad S.12ORCID,Zhang Guojie6131415ORCID,Jiang Yu1ORCID,Wang Wen2614ORCID,Qiu Qiang2ORCID

Affiliation:

1. Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China.

2. Center for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi’an 710072, China.

3. Department of Special Animal Nutrition and Feed Science, Institute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Changchun 130112, China.

4. Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, DK-2100 Copenhagen, Denmark.

5. Key Laboratory of Animal Models and Human Disease Mechanisms of Chinese Academy of Sciences and Yunnan Province, Chinese Academy of Sciences, Kunming Institute of Zoology, Kunming, Yunnan 650223, China.

6. Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650223, China.

7. Institute of Animal Science (IAS), Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.

8. Center of Special Environmental Biomechanics and Biomedical Engineering, School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, China.

9. Sichuan Institute of Musk Deer Breeding, Sichuan 610000, China.

10. College of Life Sciences, Shihezi University, Shihezi, Xinjiang 832003, China.

11. The Key Laboratory of Animal Biotechnology of Xinjiang, Xinjiang Academy of Animal Science, Xinjiang, Urumqi 830026, China.

12. Recombinetics, Inc., St. Paul, MN 55104, USA.

13. China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China.

14. State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.

15. Section for Ecology and Evolution, Department of Biology, University of Copenhagen, DK-2100 Copenhagen, Denmark.

Abstract

Phylogeny and characteristics of ruminants Ruminants are a diverse group of mammals that includes families containing well-known taxa such as deer, cows, and goats. However, their evolutionary relationships have been contentious, as have the origins of their distinctive digestive systems and headgear, including antlers and horns (see the Perspective by Ker and Yang). To understand the relationships among ruminants, L. Chen et al. sequenced 44 species representing 6 families and performed a phylogenetic analysis. From this analysis, they were able to resolve the phylogeny of many genera and document incomplete lineage sorting among major clades. Interestingly, they found evidence for large population reductions among many taxa starting at approximately 100,000 years ago, coinciding with the migration of humans out of Africa. Examining the bony appendages on the head—the so-called headgear—Wang et al. describe specific evolutionary changes in the ruminants and identify selection on cancer-related genes that may function in antler development in deer. Finally, Lin et al. take a close look at the reindeer genome and identify the genetic basis of adaptations that allow reindeer to survive in the harsh conditions of the Arctic. Science , this issue p. eaav6202 , p. eaav6335 , p. eaav6312 ; see also p. 1130

Funder

Natural Science Foundation of Jilin Province

National Natural Science Foundation of China

National Program for Support of Top-notch Young Professionals

Strategic Priority Research Program of CAS

Talents Team Construction Fund of Northwestern Polytechnical University

1000 Talent Project of Shaanxi Province

National Thousand Youth Talents Plan

Villum Foundation Young Investigator

Central Public-interest Scientific Institution Basal Research Fund

Special Fund for Basic Scientific Research of Chinese Academy of Agricultural Sciences

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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