Prospects for Building the Tree of Life from Large Sequence Databases-Reference-Cited by-同舟云学术

Prospects for Building the Tree of Life from Large Sequence Databases

Published:2004-11-12 Issue:5699 Volume:306 Page:1172-1174
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Driskell Amy C.¹²,Ané Cécile¹²,Burleigh J. Gordon¹²,McMahon Michelle M.¹²,O'Meara Brian C.¹²,Sanderson Michael J.¹²

Affiliation:

1. Section of Evolution and Ecology, University of California, One Shields Avenue, Davis, CA 95616, USA.

2. Center for Population Biology, University of California, One Shields Avenue, Davis, CA 95616, USA.

Abstract

We assess the phylogenetic potential of ∼300,000 protein sequences sampled from Swiss-Prot and GenBank. Although only a small subset of these data was potentially phylogenetically informative, this subset retained a substantial fraction of the original taxonomic diversity. Sampling biases in the databases necessitate building phylogenetic data sets that have large numbers of missing entries. However, an analysis of two “supermatrices” suggests that even data sets with as much as 92% missing data can provide insights into broad sections of the tree of life.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference28 articles.

1. Materials and methods are available as supporting material on Science Online.

2. BLASTCLUST vers. 6.1 2002

3. O. R. P. Bininda-Emonds, S. G. Brady, J. Kim, M. J. Sanderson, Pac. Symp. Biocomp.6, 547 (2001).

4. On the Best Evolutionary Rate for Phylogenetic Analysis

5. Obtaining Maximal Concatenated Phylogenetic Data Sets from Large Sequence Databases

Cited by 210 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Phylogenomic analyses of ochrophytes (stramenopiles) with an emphasis on neglected lineages;Molecular Phylogenetics and Evolution;2024-09

2. Marine introgressions and Andean uplift have driven diversification in neotropical Monkey tree frogs (Anura, Phyllomedusinae);PeerJ;2024-04-16

3. A supermatrix phylogeny of the world’s bees (Hymenoptera: Anthophila);Molecular Phylogenetics and Evolution;2024-01

4. Marine introgressions and Andean uplift drives diversification in neotropical Monkey tree frogs (Anura,Phyllomedusinae);2023-08-03

5. UCE phylogenomics, biogeography, and classification of long-horned bees (Hymenoptera: Apidae: Eucerini), with insights on using specimens with extremely degraded DNA;Insect Systematics and Diversity;2023-07-01