1. Laboratoire Adaptation et Pathogénie des Microorganismes, Université Joseph Fourier, Institut Jean Roget, F-38041 Grenoble, France.
2. CNRS UMR5163, F-38041 Grenoble, France.
3. INSERM, Infection Antimicrobials Modelling Evolution (IAME), UMR 1137, F-75018 Paris, France.
4. Université Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité, F-75018 Paris, France.
5. CNRS-UMR 8030, 91057 Evry Cedex, France.
6. CEA/DSV/IG/ (Commissariat à l’Energie Atomique et aux Energies Alternatives/Direction des Sciences du Vivant/Institut de Génomique) Genoscope LABGeM (Laboratoire d’Analyses Bioinformatiques en Génomique et Métabolisme), 91057 Evry Cedex, France.
7. Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.
8. Systems Biology Program, Harvard University, Cambridge, MA 02138, USA.
9. Faculty of Arts and Sciences, Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA.
10. Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA.
11. BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI 48824, USA.