A tutorial hub for realising the potential of tools within the SPARC ecosystem

Author:

Shahidi NiloofarORCID,Athavale Omkar,Munarko YudaORCID,Roesler Mathias,Tran Kenneth

Abstract

The Stimulating Peripheral Activity to Relieve Conditions (SPARC) data portal is a platform that allows users to access large sets of curated data and tools. Data on the portal is sourced from researchers working in a range of disciplines applied to peripheral nerve activity, including imaging, computational biology, electrophysiology and clinical research. However, many existing tutorials and examples for SPARC do not document examples of interfaces between tools within the SPARC ecosystem. Thus, we see an opportunity to lower the barrier for entry into the SPARC ecosystem, by creating accessible guides to create workflows using multiple SPARC tools. To do this, we have developed an online hub for hosting tutorials that can guide new users through the entire workflow of acquiring data, processing it, and visualizing it, using common, open-source scientific computing tools and crucially, spanning the repertoire of currently available SPARC tools. Our approach encapsulates the workflow within a Jupyter Notebook, which is designed to be readily accessible to new users of SPARC. Having a hub of tutorials that can be easily understood will not only accelerate the growth of the SPARC community but also increase the uptake and usage of tools by members of the community.

Publisher

F1000 Research Ltd

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