The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms
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Published:2022-05-16
Issue:
Volume:11
Page:530
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ISSN:2046-1402
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Container-title:F1000Research
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language:en
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Short-container-title:F1000Res
Author:
Walker KimberlyORCID, Kalra DivyaORCID, Lowdon Rebecca, Chen GuangyiORCID, Molik David, Soto Daniela C.ORCID, Dabbaghie Fawaz, Khleifat Ahmad Al, Mahmoud MedhatORCID, Paulin Luis FORCID, Raza Muhammad Sohail, Pfeifer Susanne P.ORCID, Agustinho Daniel Paiva, Aliyev ElbayORCID, Avdeyev PavelORCID, Barrozo Enrico R.ORCID, Behera Sairam, Billingsley Kimberley, Chong Li ChuinORCID, Choubey Deepak, De Coster Wouter, Fu YileiORCID, Gener Alejandro R.ORCID, Hefferon TimothyORCID, Henke David MorganORCID, Höps Wolfram, Illarionova Anastasia, Jochum Michael D.ORCID, Jose Maria, Kesharwani Rupesh K., Kolora Sree Rohit RajORCID, Kubica JędrzejORCID, Lakra Priya, Lattimer DamarisORCID, Liew Chia-Sin, Lo Bai-Wei, Lo Chunhsuan, Lötter AnneriORCID, Majidian SinaORCID, Mendem Suresh KumarORCID, Mondal Rajarshi, Ohmiya Hiroko, Parvin Nasrin, Peralta CarolinaORCID, Poon Chi-Lam, Prabhakaran Ramanandan, Saitou Marie, Sammi Aditi, Sanio PhilippeORCID, Sapoval Nicolae, Syed Najeeb, Treangen Todd, Wang Gaojianyong, Xu Tiancheng, Yang JianzhiORCID, Zhang ShangzheORCID, Zhou Weiyu, Sedlazeck Fritz JORCID, Busby Ben
Abstract
In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.
Funder
Large Facilities Office Swiss National Science Foundation China Scholarship Council PhD scholarship National Library of Medicine ALS Association Milton Safenowitz Research USDA Agricultural Research Service HQ Research Associate program in Big Data FWO The Motor Neurone Disease Association The Research Council of Norway Centers for Disease Control and Prevention through the Association of Public Health Laboratories NIHR Maudsley Biomedical Research Centre
Publisher
F1000 Research Ltd
Subject
General Pharmacology, Toxicology and Pharmaceutics,General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine
Cited by
2 articles.
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